XLOC_004417 (gemin6)


Basic Information

Item Value
gene id XLOC_004417
gene name gemin6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 45468730 ~ 45470370 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008374
caGTGTGGTGCTGGTGAGTTTGGACGAGGCCGAGCGTCCGGCGGTGACTCTGGTGTTGGGTCATGCGGTCTCAGACGTGCAGGTGCTCAGCGCGGGATCAGAGCAGACGCTCAGCCGCATGCGCAGCGTGttcctgcagacacacacaccgacacacactCTGAGCGCAGACGAGCTGCAGCGCCGCAGGGAGAGCGTCCGCCGCTGGCTGCAGGACAACAGAATCCCGGTGCAGGAGGACGGGGAGCTGCTGCGGGTGGCCCACGCTCTCACCATCAGCGCCCCCTACAGGCCCGGAGACTGCAGCTGCGCTAACCAGATCATACTGGCCCGAGTGCAGAGCCTGCTGGAGAACAACCCCGAGACCAGCGGAGACGCGCTGACCACTGAGAGCACACAGGGCTCGGGTTAGGAACGCTTTagattaaagggtcagttcacacaacAATTACAGATCTGTCAGCACTTACTCACTTTTCACCTGTTGAACACTAGGgaagatatcttgaagaatgtttgaaacagcTGACCATTCACCACAGTGTTTtttacctactatggaagtcaatggttaccggtttccagcattcttcaaaatatctccttgtGTGCTCAACGTAAGAAACTCAAACGTTaagtttaaataagtagtttgaacaagcagaaatcATCTTTGActgtgctgaacacaaaagaagatactttgaagaatgctgaacacCACTGACtaccataataggaaaaacaaacactatagtcaatggttaccggttttcaacattcttcaaaatatctccttttttgtttaacagaagaaactcaaaagtGCTCTGGAAAAAAGACTGATTGTATTCACTACATGTTTTTAAGATCAGCGCTTGCAGACTATTCATGCAGactgcatttaaacaaatgaagttgaacatcaCTACACTTACCTTCTGTTAAATTCAGCCTGCTTAAATAGTTTGTAACCACTGATCTTGAAAACATAGTGAATACAATCCATCTTTTTTCTTGTGCacttttgagtttcttctgttgaacacaaaaggagatactttgaagaatgctggaaaccggtaaccattgacttctataatagGTGAACCACTGATCTTAAAAACATGTAGTAAATGCAATCAATCTTTTTTTCAGactgtgttgaacacaaaaggagatactttgaagaatgttggaaactggtaaccgtGGACTATAGTGTTTGTTTATCCTATTATAGTAGTCAGTGgtgttcagcattcttcaaagtatcttcttgtTCTCAGCAGTCAAAAATGACTtcagctgcttgttcaaacttatttaaaatgagctgaatcaacacaactcTGGGTTTTTTTCATCTGAAATCTCCTCAAGTCATCTCGTTTTTCCTCAAAGTAAGATCCGAGAGCTGAATGCATGTGTTTACATTCAAAAATAAAGTGCGGTGAGGAACTTAGATGACGGTATTTGTTTGAATGATGACAGTGTTTCCCTctgtgggtgaactgtccctttaaatgtgaCGTTGTGTAAATTACATTCACATGTCTGACGACTCTTTGATCTGTTGATTTGtcttcttatatatatatttgctctTTTTGTACGTTCTATTAAAGGTTTCCAGATAAA

Function

symbol description
gemin6 Predicted to be involved in spliceosomal snRNP assembly. Predicted to act upstream of or within spliceosomal complex assembly. Predicted to be located in nucleus. Predicted to be part of SMN complex. Orthologous to human GEMIN6 (gem nuclear organelle associated protein 6).

GO:

id name namespace
GO:0000387 spliceosomal snRNP assembly biological_process
GO:0000245 spliceosomal complex assembly biological_process
GO:0034719 SMN-Sm protein complex cellular_component
GO:0005634 nucleus cellular_component
GO:0032797 SMN complex cellular_component

KEGG:

id description
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-090218-1 Predicted to be involved in spliceosomal snRNP assembly. Predicted to act upstream of or within spliceosomal complex assembly. Predicted to be located in nucleus. Predicted to be part of SMN complex. Orthologous to human GEMIN6 (gem nuclear organelle associated protein 6).

Ensembl:

ensembl_id ENSDARG00000105394

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008374 True 1641 mRNA 0.43 1 45468730 45470370

Neighbor

gene id symbol gene type direction distance location
XLOC_004416 rfc4 coding downstream 33716 45426609 ~ 45435014 (-)
XLOC_004415 ankrd13c coding downstream 48396 45401608 ~ 45420334 (-)
XLOC_004414 trappc10 coding downstream 73128 45354838 ~ 45395602 (-)
XLOC_004413 notum1b coding downstream 220638 45244618 ~ 45248092 (-)
XLOC_004412 tmc8 coding downstream 252046 45199369 ~ 45216684 (-)
XLOC_004063 CR854846.1 misc downstream 29341052 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 32777039 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 32846963 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 32877434 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 32955468 12512966 ~ 12513262 (-)
XLOC_004401 NA non-coding downstream 610129 44852582 ~ 44858601 (-)
XLOC_004399 BX569779.1 non-coding downstream 712247 44750935 ~ 44756483 (-)
XLOC_004398 NA non-coding downstream 746399 44716828 ~ 44722331 (-)
XLOC_004395 NA non-coding downstream 865105 44601861 ~ 44603625 (-)
XLOC_004393 NA non-coding downstream 943800 44522806 ~ 44524930 (-)

Expression


Co-expression Network