XLOC_004404 (zgc:171772)


Basic Information

Item Value
gene id XLOC_004404
gene name zgc:171772
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 44898714 ~ 44906703 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008330
cgctgtggtgacctctgatgaataaagagactataagctgaaggaaaatgaattaatgaattaatctaaaagattataaaaaacattttattattattattagtagtagtaatattgcTTAACAGCTacgtttatattaaaatatacattctgCTGAGCGCTCGGAGTTAGTCCTCCAGTTTCCCACAATGCGTCAGTGTGCGCGCTGGTAAGTGGCGCATGCGCAGTGGTTCGGTCTCTTTCGGAACCGCAGCCCTTCTGCTAAGATGGCCAAGCGCACCAAGAAGGTGGGAATCGTGGGAAAGTACGGCACCCGTTATGGTGCGTCGCTCAGGAAGATGGTAAAGAAGATCGAGATCAGCCAACACGCCAAATACACCTGCTCCTTCTGCGGAAAGACTAAGATGAAGAGGAAGGCTGTGGGCATCTGGCACTGCGGCTCCTGCATGAAGACTGTGGCTGGAGGAGCCTGGTCATACAACACAACATCCGCCGTGACGGTGAAATCCGCCATCAAGAGACTGAAGGAGCTGAAGGACCAGTAATGAACTGCTCTGCTGTATCTGTGTCGGACTGTTTCTCTCTGTGGCTCTTTAAACATCCCATAATAAATCGGAGTCTTGAGCGAACGCTGCTTCTGTCTTATTTCATGAGTGCATGATCACACTAAGATAGATGAGAATTTCCCAAAAAACTGGAGTGGAGTAATGGATTTTTGTAGTGATGAGATTCATGTAGTGACGAGGAAAAAGGTTGGTACAATTATAAAAGGGTATCTGAACTACAATAATACACATGGGAAAGacgagtttaaaaaaaaatatgaatatttacacTTGGATGCTTGCATTTTAATTATCTGagaaactaatttaaaaatatatcttaatttatatatatgaaaaattagAATTTTTATACGTGtttgtgtacataaaaaaaaatatataaattgtgtatgtgtgtgcgtatatttatatactgttggtgtgtgtgtgtgtgtgtgtgtgtgtatacacacatacatatatatatatatatatatatatatatatatatatatatatatatacatgcatacatacatacatacacctgcatacacacacacacacataaatatgcatgtgtgtatgcatgtatcgCACACAAAGTTAATTACATCAGGTAATGGAATTATTTTTAAGAGTATTTTCATttgagtaaaaaatgtttttataatttctgGTTGGGTTAAACTAAAATAATTGATGTAAAATCAGTATACTTGACAACTTATTTCAGTGTTTACTGTTTTCTTTATGTCTGGTATATCAAAGGTAAATAGACATTATGAACGTGTTGGTAGGTTTAActactattaaaataatacagaAGTTTATTATATGCTAATTAAGACAAACAAGAGttattttatgcatgttttagattaaaactattgtaatattttaaatacaaaaaatattatttctctCTTAAGGTCAAAATTAGCTCATGAAATTCATATGAAAAGTATATGAATGCAAAAAAAGTGATgtcttaaaaaataatagtaatagcaGCATAAAAAAACAATCCTGGAGATATGGCTGGATCCTTCTGCTCTGAATGATCTTTCCTGGAGGCTCTTTCAACAGGACATTAGTCTGGAAAGCaccacagccaaaataaatgcCAGTAAAAAACTACAATTTTGGTGAATGTGAGAGACTATATCAGTTATGTTTCAGTCTTTTGTTCCCATCATTACAGTATTACtgtttttcattttacttttttgttggaTGAATCTCGGGCTTGgttcaaaatcaaaatgttcagtaaaaaaaaagggGAGAGTGTGGACTGTAGCAACGCTGCAATTAGTTCATTTTTTACAAAGACCGTAATAAAGCCACATTAATCAGATGCACACTCACACTGCTATAACATTAATATGATAAATGTAGAATTTACACTTGAACAGGCAAAGTCAAACGAGTACAACATTTGCCACTTTCATTCAACGTGATAATAAACATCAGATCAAActgtctttaattttttatttgtaaacacCATGTAAATTGATTAAACTGTTAAACGTGTAAAACTGGCTGAATAAAGAAGACAGACTTGTAAAAAGCAGGTCTGAGTCAATTATCAAGGAATCAGGAATAATTTGAACTAACAATATTTgtattgattattttaataattaaattagtaaTAATCCTtgcatttctatagcgcttttctggacactcaaagcgctttacacaggaGGAAATCTCCTcgtccagtgtgcagcatccacctggatcaCACGACGGCAGCCAGTTTGAggcagaccgcacaccacacaccagctgattggtggagaggagacagactgATGAAGCagatcatgatatggggagggttaggaggccatgatggacagaagccaCCCAGGAATGGGATtataaccacagagagtcgggacttaaacgtctcatccgaaagacggcgctcactgagcagtacagagtccccgtcactatactggggcattaggacccacacagaccacaggttgggcctGCTtccctcactaacaccacttccagcagcaacctagcgttcccatgtgctctcccatccagatactgaccagccctgcctagcttcagtgggcgactgtgcgagagttgcagagagctagctgccggctgtaAACTCATTTTGCATGAAACTTCACTAAACTACTTCATACTGTGACATTCATTAATCAAAGAATGAATTGTTTGAAATTACATTGTGTAACCTGACTAtgttaatatgaaaatattctcGTCAATGTTGTGTCAGCAAAGGTTAAACTTGTTATGCTAGCTGgataaccctactgaaaaaactgcttaaaccagcctaggctagttggctggttttagatgggGTTCGGCCACTTCCAGCCTGTTTTTTTGCTAGTCAGGcggggagatgaccagctaaaaccagcttgaccagcctagccaggctgggagcccagacaaaaccagctatgtccagcttaaaccaggctggtcaagctggttttagctggatttagctggtcagtttgctgcctgaccagctaagaccaggctggaaatggccaaaatccctctaaaaccagcctggtcaaccagctaaaaccagccaacaagcCTAGGCTAGTTTACGCTGGATTGTTCTGCAGTGTGTAATACATGATAG
>TCONS_00008501
GGCCAAGCGCACCAAGAAGGTGGGAATCGTGGGAAAGTACGGCACCCGTTATGGTGCGTCGCTCAGGAAGATGGTAAAGAAGATCGAGATCAGCCAACACGCCAAATACACCTGCTCCTTCTGCGGAAAGCACAACATCCGCCGTGACGGTGAAATCCGCCATCAAGAGACTGAAGGAGCTGAAGGACCAGTAATGAACTGCTCTGCTGTATCTGTGTCGGACTGTTTCTCTCTGTGGCTCTTTAAACATCCCATAATAAATCGGAGTCTTGAGCG

Function

symbol description
zgc:171772 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Orthologous to human RPL37A (ribosomal protein L37a).

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070928-31 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Orthologous to human RPL37A (ribosomal protein L37a).

Ensembl:

ensembl_id ENSDARG00000115271

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008330 False 3216 mRNA 0.38 4 44898714 44906703
TCONS_00008501 True 276 lncRNA 0.51 2 44901303 44904326

Neighbor

gene id symbol gene type direction distance location
XLOC_004403 eif4a3 coding downstream 585 44878571 ~ 44898129 (-)
XLOC_004402 opn6a coding downstream 22709 44858979 ~ 44876005 (-)
XLOC_004401 NA coding downstream 40113 44852582 ~ 44858601 (-)
XLOC_004400 map1lc3c coding downstream 96746 44798056 ~ 44801968 (-)
XLOC_004399 BX569779.1 coding downstream 142231 44750935 ~ 44756483 (-)
XLOC_004405 pfklb coding upstream 3912 44910615 ~ 44931962 (-)
XLOC_004406 orc2 coding upstream 30502 44937205 ~ 44945636 (-)
XLOC_004407 ldb1b coding upstream 46895 44953598 ~ 44999858 (-)
XLOC_004408 cant1b coding upstream 215444 45122147 ~ 45153006 (-)
XLOC_004409 syngr2b coding upstream 252650 45159353 ~ 45171208 (-)
XLOC_004063 CR854846.1 misc downstream 28771036 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 32207023 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 32276947 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 32307418 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 32385452 12512966 ~ 12513262 (-)
XLOC_004398 NA non-coding downstream 176383 44716828 ~ 44722331 (-)
XLOC_004395 NA non-coding downstream 295089 44601861 ~ 44603625 (-)
XLOC_004393 NA non-coding downstream 373784 44522806 ~ 44524930 (-)

Expression


Co-expression Network