XLOC_004409 (syngr2b)


Basic Information

Item Value
gene id XLOC_004409
gene name syngr2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 45159353 ~ 45171208 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008349
tgcgtTTTACCGATGGAGTCGCGCAGTGTGGCGTACGGAGCTTCTCTCGCCGGAGCGGGATTCGACCTCGTCAAATTCATCAAACAGCCGCAAACGGTGGTTCGTTTCCTCAGCTGGGTGTTTGCCATCGTGGTGTTCTCCTCCATCACTGCTGAAGGCTACGTGAACAGCACTGATGAAGCTGAGGTCAGGTGTGTGTTCAACAGGAACGACGGCGCCTGTCATTATGGCGTGGGCATCGGTGTGATCGCCTTCCTGGCCTGCGTGGGCTTCCTATTGGCTGATGCGATTCTGCCGCTCATCAGCAACGCTCAGGAGAGGAAGTACATCGTGATGGCGGATCTGGCCTTCTCAGGCTGCTGGACGTTCCTTTGGTTTGTGTGCTTCTGTCTGACGGCGGATCAGTGGTCCAAAACCTCTGACCGCAGCGGGATTCCCACCGATGCTGTACACGCCGTCATCGCGTTCTCCTTCTTCTCCATCGCCtcatggatgggatggcgggcaaGAATGAGTGTAAATCTGATTCTGCAGAGACTGACTTTGGATCAGCCAGTGTTCATATGAAACACAAACACCTGTAATGCCGAGCTCTGGTGCGGTTTATCTGTATGTAACACTGATGTGAAACACCAGAGGCAGCATTTACACAATATCCATCCATCAGTGTCATTATTTAAATCATTTCAGAGGTGAACTTTTACAATGTTTTAGGATGGAAATCCACATTCTTTCCTCCAGCAGATCCCTCACAGCTTTTACATCGTGTGTATTTATTCTCCAGTCTCGTAAGGTTTCTCCTTACAAAGGTCTTTTTCTCTTGAGTAAcgtgatttttatttaaatgcacaaacaaacaaacaaaagcactaGTGTGTATTCTCAATAAAAGACAAGACTCTTTAAGAAA
>TCONS_00008350
ctgtcgtgtgtgtgtgtatgtgtgtgtgtgtgtttgagtgtgcgtTTTACCGATGGAGTCGCGCAGTGTGGCGTACGGAGCTTCTCTCGCCGGAGCGGGATTCGACCTCGTCAAATTCATCAAACAGCCGCAAACGGTGGTTCGTTTCCTCAGCTGGGTGTTTGCCATCGTGGTGTTCTCCTCCATCACTGCTGAAGGCTACGTGAACAGCACTGATGAAGCTGAGGTCAGGTGTGTGTTCAACAGGAACGACGGCGCCTGTCATTATGGCGTGGGCATCGGTGTGATCGCCTTCCTGGCCTGCGTGGGCTTCCTATTGGCTGATGCGATTCTGCCGCTCATCAGCAACGCTCAGGAGAGGAAGTACATCGTGATGGCGGATCTGGCCTTCTCAGGCTGCTGGACGTTCCTTTGGTTTGTGTGCTTCTGTCTGACGGCGGATCAGTGGTCCAAAACCTCTGACCGCAGCGGGATTCCCACCGATGCTGTACACGCCGTCATCGCGTTCTCCTTCTTCTCCATCGCCtcatggGGAGCGCTAACATACTTCGCTGTGGTGCGATTTCGTCAGGGTGTTGAAGAAGTGACCCAGAGCTACACGGATCCTCCACCCGACCTCTCGTCCCCGTACCCCAGCACATACACTCCGCCAACATACCCGTCCTTCCAGAACACCGGAGCAGATATTTACCAGCAGCCGCCCTTTACCCCCAACCCCGACCCGTCCGGACAGACCAGCTTCCAGCCGCCCGTCTACTGACACGcccacccaggtcacatgacacCTATGCGGGAGACAGCCAAGAGAAGCGGACTGTCATTGACGTGCTTTATATAAACGTGTACATATGATCATGTTTCTTACTGTAGTCGAGGTTTACACTGATGAACTGGAATAAAGTGAACGCAGGTCAGTCGCTCACACTGGAGTctcagcggtgtgtgtgtgctttattaAAGGGGATCTATTGTGCATCTATtgatacaagatgtaaaatatgtCCCTGATGTGTGTGTAGTGAAGTATCAGCTCAGAATAACACAGGTAATgtcctccagctctctgaaactgacactttcaggctttgatccgaattgtggcattttggtgactgtcacttttaatgcaaatgagattgtgctatttttaagaagagggcggagctagaAGTGCATTTGCATAAACGTAATGACAGAtgtaaaacagcagtgtgtgtgtgtgtgtgagtgcttcagtgtgtgcttgatgcttgtgtcagtctatgtggctcctgtcgctgttcatctagaactccacatctataatcctcttagtctatgctgacgttatcttcagcagctcaaacactctaatggctaatggacagacggctgcttctcactcagggctgctgtttatgctaatgagatggagagatgggcactagtgggcggggctttccccctctgatgactctggtgtctgattagaacaaacacagtGAATTGATGTTGAGcatcagaggctgctggagatactCACACACTGCTCACACAACATGTAAAAGTGATTTCTGTATAATAGGCCCTCTTtagagctggataagttggaatgTACTGGTGGATGGGAAACAAAGAGCCGCTGACCCGTCTGCTAATGGTGTTAGTGAAGAGCTGGACTGTCCTTCACAGCAGAAATATGCCGTATTTCTCTGATATTACAGCGTGATGAGTGAAGGACTGCTCATTATAGTCTTCATTTGTTTCTATGAAAGCTTGTTTCTAGCACTGAATATTAAAATTAAggttattgtgag
>TCONS_00008351
gtgtttgtgtgttcgtgTTGCGCTCTCagctgtcgtgtgtgtgtgtatgtgtgtgtgtgtgtttgagtgtgcgtTTTACCGATGGAGTCGCGCAGTGTGGCGTACGGAGCTTCTCTCGCCGGAGCGGGATTCGACCTCGTCAAATTCATCAAACAGCCGCAAACGGTGGTTCGTTTCCTCAGCTGGGTGTTTGCCATCGTGGTGTTCTCCTCCATCACTGCTGAAGGCTACGTGAACAGCACTGATGAAGCTGAGGTCAGGTGTGTGTTCAACAGGAACGACGGCGCCTGTCATTATGGCGTGGGCATCGGTGTGATCGCCTTCCTGGCCTGCGTGGGCTTCCTATTGGCTGATGCGATTCTGCCGCTCATCAGCAACGCTCAGGAGAGGAAGTACATCGTGATGGCGGATCTGGCCTTCTCAGGCTGCTGGACGTTCCTTTGGTTTGTGTGCTTCTGTCTGACGGCGGATCAGTGGTCCAAAACCTCTGACCGCAGCGGGATTCCCACCGATGCTGTACACGCCGTCATCGCGTTCTCCTTCTTCTCCATCGCCtcatggAAGTGACCCAGAGCTACACGGATCCTCCACCCGACCTCTCGTCCCCGTACCCCAGCACATACACTCCGCCAACATACCCGTCCTTCCAGAACACCGGAGCAGATATTTACCAGCAGCCGCCCTTTACCCCCAACCCCGACCCGTCCGGACAGACCAGCTTCCAGCCGCCCGTCTACTGACACGcccacccaggtcacatgacacC

Function

symbol description
syngr2b Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuromuscular junction and synaptic vesicle membrane. Orthologous to human SYNGR2 (synaptogyrin 2).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0031594 neuromuscular junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070424-19 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuromuscular junction and synaptic vesicle membrane. Orthologous to human SYNGR2 (synaptogyrin 2).

Ensembl:

ensembl_id ENSDARG00000104470

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008349 False 910 mRNA 0.48 4 45159353 45171139
TCONS_00008350 False 1796 mRNA 0.49 4 45161272 45171179
TCONS_00008351 True 766 mRNA 0.58 4 45162282 45171208

Neighbor

gene id symbol gene type direction distance location
XLOC_004408 cant1b coding downstream 6347 45122147 ~ 45153006 (-)
XLOC_004407 ldb1b coding downstream 159495 44953598 ~ 44999858 (-)
XLOC_004406 orc2 coding downstream 213717 44937205 ~ 44945636 (-)
XLOC_004405 pfklb coding downstream 227391 44910615 ~ 44931962 (-)
XLOC_004404 zgc:171772 coding downstream 252650 44898714 ~ 44906703 (-)
XLOC_004410 si:dkey-93h22.7 coding upstream 3312 45174520 ~ 45185792 (-)
XLOC_004411 CR293511.1 coding upstream 16590 45187798 ~ 45199251 (-)
XLOC_004412 tmc8 coding upstream 28161 45199369 ~ 45216684 (-)
XLOC_004413 notum1b coding upstream 73410 45244618 ~ 45248092 (-)
XLOC_004414 trappc10 coding upstream 183630 45354838 ~ 45395602 (-)
XLOC_004063 CR854846.1 misc downstream 29031675 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 32467662 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 32537586 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 32568057 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 32646091 12512966 ~ 12513262 (-)
XLOC_004401 NA non-coding downstream 300752 44852582 ~ 44858601 (-)
XLOC_004399 BX569779.1 non-coding downstream 402870 44750935 ~ 44756483 (-)
XLOC_004398 NA non-coding downstream 437022 44716828 ~ 44722331 (-)
XLOC_004395 NA non-coding downstream 555728 44601861 ~ 44603625 (-)
XLOC_004393 NA non-coding downstream 634423 44522806 ~ 44524930 (-)

Expression


Co-expression Network