XLOC_004410 (si:dkey-93h22.7)


Basic Information

Item Value
gene id XLOC_004410
gene name si:dkey-93h22.7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 45174520 ~ 45185792 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008352
GTGCTCAACACATGCAGTGTTCAGGGTGGACCCGTCAGCTCTGCTCAACTGTTCTCTTTTTCTGCATGGTAATCTGCAGTCAAATacgttattaataataaaagttctTCCTCTGCTGTTTGGATATTGTGCTCTTCTTCATCTGCAGTGATGACATCGATGCATCTGATTCTCATAGGTCTGTCTGTTCTGCATGCAAGAACGGGAGGCCTGAATGAACAAAAGCTTGATAAACCAGTGCTGAAGGGCCCATCTATCGCATTAAAAGACACATCCGAGTATTTCTACTGTGAGATTCCTGGACACACGGCGGCAGTGCAGGTCCATTATGAGCTTTACGTCGAGACAAACATGGATAAGATTATTTCAGAGCACACCTCACTGACTGGAGATACAGCCGCCTTACTTTTATTCGTAAGAGAGCATCACGATGGTCGACTGATCTGCAAGGCCAGCGCACACAATAACACAGACATCCAGAGCTCCTACAGTGACGCCTGGGAGCTCAGAGTCATTACTCCAGTGAAGGGACTGGGCATCATTTCACATCCTTCCAGTCTGAATGTGTGGGAAGGACAAACTTTAACCCTCCAGTGCAAAAAGGCCCAAGGAACCTACGTCTCTTATGACTGGTTCTTGAACGACAAGCCAGTTCAGATGCAGTACGACAGGAATAATGACACACTGATCATACACAGACTGTCTGCCCGACATACAGGCGATTATACGTGTGTGGCATCAAACCAGTTCAACGACACAATCTACAACTCCAGCAGTGAAGCCGTGACTGTAAATGTTAAAGaATATTTGACAAAGCCTGAGATCCTGTTTGACGTTGTGAAGATTGAGGATTGTAATTATAAAGCCATGATCACATGTCGATCTGAGAGAGGAACTCCCCAAAACACCTTCACATTACTGAACCACACGCAAATCATCACCAACGTCACAACCCAAAACACCAGCGCCGTCTTCAGTGTGCCCATCCAGATGAACATCGATATGGGACGCATGAAATGCAACGCTAGTAATGAGGGCAACTGGGTGATGAGTGAACCCACCAGATTATTTGTAGAGCCTGTAGGTGGCGCTGTGACGCTGACGCCCTTCAAACACATTAAAGATTTCCAGGTTGTCGGTGTGGGTTTGCTCTGTAAAGTGGAGCGAGGGACGTTTCCGGTGTACCGCTGGTTCCACAATGGCAGCAGACTGACGGGTCGAGGAGATTTCTACGCCGTGGCCTATTCAGACGAATCTTTCCTCTCGCTGTCTGTGAGTCGAAACAGTAATGGATTTTACCACTGTGATGCTGCGGACAGATTCGACAACAGCAGCAGCATCAGCAGCGCGAAGATGATCATCAGTGAAGAAGCGCTGAACAGTGTTTCTCCTTTGGTTGCGGTCGTCGTTTTCACCTGTTTTGCTGTGCTGATTGTTGCCGTGACGACTTGCTGCATGTATGGGGTTATGCTGCGGAGACGATATTCAAGTAAATACCCacTCAATGAACAACGCGGGATAAACAAAATTCCTGTTAAAGATGAAGAAGAGGATGACGATTATCTGATGTTGGAGGGTTATGATGAAGACGTCACCCACGCAGACAGAATGAGTGATTCCAATgagGAAGAAGATGAATCTGTAGATGAAACTCTGCTGTATGAAGGCGCTGCTCCTGAATAACTCTACACACTCTTTTATTAATCAGCTCCACTGGTTGAGTTTAAGACTGAGATCCACTGTTTGTTTCCTCACAGACGCAAGCATATCTTCACTCATTCATCGCATGTTATTCATTCAGACAAAGCTTTATTCATAGCGGGACAATAGACAAGCGCTCATGGGTTGACATGACtgtgaccaatcagaggagagaGCAGCCAACAATGTGTCTACTGTCAGATTCATGTGAAATAactctgtctatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagactggggTGGGAAAACTACAAATCAGTAACAAATAATTATGTTTGATAAAGCAAACAATGTTGATTTTAATGACGACATTAAAACTTTTGATTAAAATCGG

Function

symbol description
si:dkey-93h22.7 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-141216-252 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000099600

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008352 True 2085 mRNA 0.45 11 45174520 45185792

Neighbor

gene id symbol gene type direction distance location
XLOC_004409 syngr2b coding downstream 3312 45159353 ~ 45171208 (-)
XLOC_004408 cant1b coding downstream 21514 45122147 ~ 45153006 (-)
XLOC_004407 ldb1b coding downstream 174662 44953598 ~ 44999858 (-)
XLOC_004406 orc2 coding downstream 228884 44937205 ~ 44945636 (-)
XLOC_004405 pfklb coding downstream 242558 44910615 ~ 44931962 (-)
XLOC_004411 CR293511.1 coding upstream 2006 45187798 ~ 45199251 (-)
XLOC_004412 tmc8 coding upstream 13577 45199369 ~ 45216684 (-)
XLOC_004413 notum1b coding upstream 58826 45244618 ~ 45248092 (-)
XLOC_004414 trappc10 coding upstream 169046 45354838 ~ 45395602 (-)
XLOC_004415 ankrd13c coding upstream 215816 45401608 ~ 45420334 (-)
XLOC_004063 CR854846.1 misc downstream 29046842 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 32482829 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 32552753 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 32583224 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 32661258 12512966 ~ 12513262 (-)
XLOC_004401 NA non-coding downstream 315919 44852582 ~ 44858601 (-)
XLOC_004399 BX569779.1 non-coding downstream 418037 44750935 ~ 44756483 (-)
XLOC_004398 NA non-coding downstream 452189 44716828 ~ 44722331 (-)
XLOC_004395 NA non-coding downstream 570895 44601861 ~ 44603625 (-)
XLOC_004393 NA non-coding downstream 649590 44522806 ~ 44524930 (-)

Expression


Co-expression Network