RNA id: TCONS_00008352


Basic Information

Item Value
RNA id TCONS_00008352
length 2085
RNA type mRNA
GC content 0.45
exon number 11
gene id XLOC_004410
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 45174520 ~ 45185792 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGCTCAACACATGCAGTGTTCAGGGTGGACCCGTCAGCTCTGCTCAACTGTTCTCTTTTTCTGCATGGTAATCTGCAGTCAAATacgttattaataataaaagttctTCCTCTGCTGTTTGGATATTGTGCTCTTCTTCATCTGCAGTGATGACATCGATGCATCTGATTCTCATAGGTCTGTCTGTTCTGCATGCAAGAACGGGAGGCCTGAATGAACAAAAGCTTGATAAACCAGTGCTGAAGGGCCCATCTATCGCATTAAAAGACACATCCGAGTATTTCTACTGTGAGATTCCTGGACACACGGCGGCAGTGCAGGTCCATTATGAGCTTTACGTCGAGACAAACATGGATAAGATTATTTCAGAGCACACCTCACTGACTGGAGATACAGCCGCCTTACTTTTATTCGTAAGAGAGCATCACGATGGTCGACTGATCTGCAAGGCCAGCGCACACAATAACACAGACATCCAGAGCTCCTACAGTGACGCCTGGGAGCTCAGAGTCATTACTCCAGTGAAGGGACTGGGCATCATTTCACATCCTTCCAGTCTGAATGTGTGGGAAGGACAAACTTTAACCCTCCAGTGCAAAAAGGCCCAAGGAACCTACGTCTCTTATGACTGGTTCTTGAACGACAAGCCAGTTCAGATGCAGTACGACAGGAATAATGACACACTGATCATACACAGACTGTCTGCCCGACATACAGGCGATTATACGTGTGTGGCATCAAACCAGTTCAACGACACAATCTACAACTCCAGCAGTGAAGCCGTGACTGTAAATGTTAAAGaATATTTGACAAAGCCTGAGATCCTGTTTGACGTTGTGAAGATTGAGGATTGTAATTATAAAGCCATGATCACATGTCGATCTGAGAGAGGAACTCCCCAAAACACCTTCACATTACTGAACCACACGCAAATCATCACCAACGTCACAACCCAAAACACCAGCGCCGTCTTCAGTGTGCCCATCCAGATGAACATCGATATGGGACGCATGAAATGCAACGCTAGTAATGAGGGCAACTGGGTGATGAGTGAACCCACCAGATTATTTGTAGAGCCTGTAGGTGGCGCTGTGACGCTGACGCCCTTCAAACACATTAAAGATTTCCAGGTTGTCGGTGTGGGTTTGCTCTGTAAAGTGGAGCGAGGGACGTTTCCGGTGTACCGCTGGTTCCACAATGGCAGCAGACTGACGGGTCGAGGAGATTTCTACGCCGTGGCCTATTCAGACGAATCTTTCCTCTCGCTGTCTGTGAGTCGAAACAGTAATGGATTTTACCACTGTGATGCTGCGGACAGATTCGACAACAGCAGCAGCATCAGCAGCGCGAAGATGATCATCAGTGAAGAAGCGCTGAACAGTGTTTCTCCTTTGGTTGCGGTCGTCGTTTTCACCTGTTTTGCTGTGCTGATTGTTGCCGTGACGACTTGCTGCATGTATGGGGTTATGCTGCGGAGACGATATTCAAGTAAATACCCacTCAATGAACAACGCGGGATAAACAAAATTCCTGTTAAAGATGAAGAAGAGGATGACGATTATCTGATGTTGGAGGGTTATGATGAAGACGTCACCCACGCAGACAGAATGAGTGATTCCAATgagGAAGAAGATGAATCTGTAGATGAAACTCTGCTGTATGAAGGCGCTGCTCCTGAATAACTCTACACACTCTTTTATTAATCAGCTCCACTGGTTGAGTTTAAGACTGAGATCCACTGTTTGTTTCCTCACAGACGCAAGCATATCTTCACTCATTCATCGCATGTTATTCATTCAGACAAAGCTTTATTCATAGCGGGACAATAGACAAGCGCTCATGGGTTGACATGACtgtgaccaatcagaggagagaGCAGCCAACAATGTGTCTACTGTCAGATTCATGTGAAATAactctgtctatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagactggggTGGGAAAACTACAAATCAGTAACAAATAATTATGTTTGATAAAGCAAACAATGTTGATTTTAATGACGACATTAAAACTTTTGATTAAAATCGG

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-141216-252 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000171328

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008347 lncRNA downstream 25608 45143497 ~ 45148912 (-) False XLOC_004408
TCONS_00008348 lncRNA downstream 25608 45147186 ~ 45148912 (-) True XLOC_004408
TCONS_00008501 lncRNA downstream 270194 44901303 ~ 44904326 (-) True XLOC_004404
TCONS_00008500 lncRNA downstream 281111 44889048 ~ 44893409 (-) True XLOC_004403
TCONS_00008499 lncRNA downstream 285488 44880825 ~ 44889032 (-) False XLOC_004403
TCONS_00008356 lncRNA upstream 20675 45206467 ~ 45207039 (-) True XLOC_004412
TCONS_00008360 lncRNA upstream 173320 45359112 ~ 45359656 (-) False XLOC_004414
TCONS_00008351 mRNA downstream 3312 45162282 ~ 45171208 (-) True XLOC_004409
TCONS_00008350 mRNA downstream 3341 45161272 ~ 45171179 (-) False XLOC_004409
TCONS_00008349 mRNA downstream 3381 45159353 ~ 45171139 (-) False XLOC_004409
TCONS_00008345 mRNA downstream 21514 45141505 ~ 45153006 (-) False XLOC_004408
TCONS_00008346 mRNA downstream 21564 45141581 ~ 45152956 (-) False XLOC_004408
TCONS_00008353 mRNA upstream 2006 45187798 ~ 45199251 (-) True XLOC_004411
TCONS_00008354 mRNA upstream 13577 45199369 ~ 45216684 (-) False XLOC_004412
TCONS_00008355 mRNA upstream 13784 45199576 ~ 45216211 (-) False XLOC_004412
TCONS_00008357 mRNA upstream 58826 45244618 ~ 45248092 (-) True XLOC_004413
TCONS_00008358 mRNA upstream 169046 45354838 ~ 45370296 (-) False XLOC_004414
TCONS_00008317 other downstream 560786 44606851 ~ 44613734 (-) False XLOC_004396
TCONS_00008303 other downstream 835300 44337157 ~ 44339220 (-) True XLOC_004385
TCONS_00008295 other downstream 1051062 44123327 ~ 44123458 (-) True XLOC_004381
TCONS_00008250 other downstream 3799394 41375011 ~ 41375126 (-) True XLOC_004339
TCONS_00008244 other downstream 4090157 41078191 ~ 41084363 (-) True XLOC_004334
TCONS_00008372 other upstream 245741 45431533 ~ 45435014 (-) False XLOC_004416

Expression Profile

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