RNA id: TCONS_00008358


Basic Information

Item Value
RNA id TCONS_00008358
length 3905
RNA type mRNA
GC content 0.56
exon number 12
gene id XLOC_004414
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 45354838 ~ 45395602 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGGAAGGGTGACCCTCAGAGTGCTGAGCTCTTCTTGCTGGACTCTCTGAAGTCGTTCGTGTCTGAGAGCTGGAGTTtgccgctcacacacacacgccggCAGATCGCGGAGTGCCAGAAGCAGCTGCAGAAGATGGACGAataccTGCAGACCAGCGCTCTGCTCGCCAGCGACACCAACCTGAGCCATGAAGAGAGAAAACACTTCTGCCAGGAGATCCTGACCTTCGCCAGCCAGCCAGAGGGCAAAGGTCAAGCCAAAGtgtctCTCAGCATGAGTTCTCTAGGTGTCCTGCAGGAGCTGATCTTCTGTCCAGCATCCGCTGTGGTTCACGTGGGTGCGGAGCTGCAGATGGAGCTGCATGTGTGCAGTCTGCAGCCGCTGCCGGTGTGTGTGCAGCAGTTCTCCGCCGCTCTGCACTTCAGTACGGATCCGCCGGGCACACACAGACGCTCCGCTCAGCAGGCGTCCGGCAGCGTGGTGTTCCCGGCGCTCAGCCCGGTGAGTGTGTCTCCTGCGCTGGAGCTGTGCGAGGTGACAGAGCTCAGTCCGTCTGACAGTGCGCTCAGCTCCGCCGGTGTGGCCTGTAAGAACACACACCTGCTGATGCGCAGGCCGGACAGCGCCACCTCTCTGCAGACGGGCGGCACTGCAGCGACATCGGCTCTGGAGGAGGCAGAACACATGCTGAGGGCCACAGACATCACACTGCAGCCCGGACACAACACCATCAGCTTCAGCGCGccgagccaGAAGCCGGGCACGTACACGCTCCGTCAGCTGTGTGCGACTCTGGGCCGTGTTCAGTTCGTCCTGCCGCACCTTTACCCTGTGGTTCAGTATGAGGTTTATTCCCAAGAGCCTCAGCTCAGCATCCAGCCgctcacagaGTGTCTGTTAGCTGGTTTGCCGCAGCAGGTTCAGTTCTGCATCCAGACGGGTCACTACAGCGTGAAGAAGGGCGACGCTCTGCAGCTCAGCAACACTGACTCCATGCctgtgctgcacacacacacctgcagcgcGCGCATCCGCAACAGTAGcggagATGTGGTGTGTGAAAGCGCTCTCTCCATCCAGTCCTCAGAGAAGGTGACCAGCATCTCTCTCCCGGCGACTCCGGCTTATCACACGCTGGAGTTCCAGCTGGAGGTGCTCTGCCGTATCCCAGCATGCCCTGTGGCGGCGCGCGTGGAGAGCGAGCGGCTCACCAACGGACAGATCAGCCATCGAGCGCGCAGCAGGACACGCTACAGCAGCGGCACCGCCATCATCGACCagaaggtgtctATTGACTGTCCCTGGTCGATCTACTCTACTCTGGTCTCTCTGACCTTCCACGTGCCCTTTAAAGTCAAACACTCGCTGCTCACTGCAGGACGCAGGAAGTTTGTCCAGGTTTGTCTTCAGAATGTTTCCGACACTAACTTCCGTCTGACCAATCAGACGCTCACTGAGAATCAAGACACACCCTCACTGGAGCTGCTCTCGCTCAACACTAAAACACACTgcgtggtgTTCAGTCAGCAGTGTGTGTTCAGCGTGTGGGAGCTGCGGTGGAGCGATGCGCCGCCCGTCTCTCTTCAGTGTGTGTTTTCAGCTTCGTTCGCTCCTGCAGATGCTCCAGACACACACCTCAAACCCTACACACACCAGTTCAGCCTGGAGAGAGTCTcgactgtGTACAGTGTGCGTGCAGACATCTCTCCGGCAGCTGGAGATGGTGAGTGTCGCTGCGGCTCCCTCTGCAGGCTGGAGGTGTCCATCACACGCCTGACTGAACACACAGATGCAGAGCGCTCAGACGAGGAGTACAGCGACACTGACGGCCTGCGCACATGCAGACTGCTGTAtgaagtgaTGGACAACAGCAGTAACTGGGCAGTGTGTGGGAAGAGTTCGGGTGTGGTCTCCATGCCGACGGCTGCCATGGCGACACATAAAGTGCAGATGGAGATCATGCCTCTGTTCGCCGGCTCGCTGCCGTTTCCCAGCATCCGTCTGTTCAGATACCTGCCGCACCAGGCCAACGCCAGCGTGCAGCCGGACtcagaCTCGTGTGTGGAGAGCGACAGTGTGTCGGTGGTGGAGCGCGGTGTGGAGGAGTGTGACTCTGCGAGTGTGCGCAGCCGCAGCAGTGTGTGCAGCAGCAGTGACGGGCCCCGGGGTCTCCCCATGCCCCGCCGGCAGGCTCTGGGCCCCGCTCAGGTGTTCAGCAGCACGCAGAGCCGACAGGTGAGGGTCCTGCCCGCCGCGGACCACCACCAGCTGGAGATCAACGTCACATGACCACACGCCCCGCCCTCTGTCTGCGCTCTGATTGGACGAGAGACGCGGCGGCTCACTCATGGACACCAGTGACTGGAGCCTTCATGTGACGactcgcgcgcgcgcgcacacacacacacacacatcccataATGCCTTGCAGCCCCTCCTCCACacgctcaggtgtgtgtgtgtaagagagtgtgtgattgtgtctgtgagatgcatgagtgtgtgttacAGTAATAAATGTGTGTGATAATGTGTGCACAAGTGTGAGAGTGCTTATGTTtgtgctcgtgtgtgtgtgtgtgtgtgtgtgtgttgatctgctgtagtatgagtgtgtgtctacTGTGCGtggttgtgtgcgtgtgtgtgtttatctgctGTAGTGTGgttgtgcgcgtgtgtgtttgtgtgtgtgtgtgcatgtgtggttgtgtgtgttcATGCTGTAGTggggttgtatgtgtgtgtgtgtgtgtgtgtgtgtgtggtgtgtgtggttgtgtttgAATCTGCTGcagtgtggttgtgtgtgtgtgtgtgtaaatctgcTGTACTGGGTGTGCGTTTGTATGTGGTTgtgagtgcgtgcgtgtttggttgtgtgtgtgtgtgtgtgtttggttgtgtgtgtgtgtgtgtgtttggttgtgtgtgtgtgtgtgtgtgtgttcatctgctgtagtgtgtgtttggttgtgtgtgtgtgtctgtgtgtgttcatctgctgtagcgtgtgtgtgtgtgtgcgcgccccCTGCTGTTGATCGGTGGTCTGCAGGTCTGGTCTGAGCAGCTCCTCTGCTGAACACACAGTcgctcttcatcatcatcatcatcttcctctCGCCGGGGATTCTGGGATTTGGATTaaaactctttatttttatttgggaGCTGAAGGTTTCCAGGGAAACGCCATCACTGTGTGACTTCATTGGTGGACAGTGTGTTTGGACACGCCCCTTCCAGCTGACATCACATGATTGACGGCTCAGACAGGAAACGGCGGTGGCGTCTGATTCAGAGCTCATATTTCACTGCAGAGAGTCTGAGTCTGCATGATCAGCGGAGAACATCAGCGAGAGACGCCAGAGCTACTGACCCATCAGGTGACGGGGAATAACAGTGTCAAATGTTGAATAAATCATCGAGAGCCTTTACACTACTGCACAGCCGTAAATCTGGATCACAATGAAGATCTGCTCAGCAGCTCCACTGCCCAGATTATTGTCAGACTGTAGATGATGCTCACACAGGAACAGGCCATTACTTCATCATTATTCTGGAGCTTCAGACGAGACTCACGGCACAATCTGGGGGAAATAtgagcgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgttggtcCTGGTCtcgtgtgtgttctgtgtgtccGGCCTGAGaaacatgcgtgtgtgtgtgtcgtcaCATGATGATGCGGTCACGCGTGCGGAGCGTCGGCCTCTATTTATTGGTGGATTTCCTGCGGTTGTGGACTGGAGGAGCAGCGTCAGCAGCTGTGTGTAAATGACCGATCAACATCACAGATtgtatttagattatttaaataaagaataTGTACGCATTAAACTACGGCAAATATACAGATGTTTTAAAAA

Function

GO: NA

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-131115-1 Predicted to be located in Golgi apparatus. Orthologous to human TRAPPC10 (trafficking protein particle complex subunit 10).

Ensembl:

ensembl_id ENSDART00000168770

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008356 lncRNA downstream 147799 45206467 ~ 45207039 (-) True XLOC_004412
TCONS_00008347 lncRNA downstream 205926 45143497 ~ 45148912 (-) False XLOC_004408
TCONS_00008348 lncRNA downstream 205926 45147186 ~ 45148912 (-) True XLOC_004408
TCONS_00008501 lncRNA downstream 450512 44901303 ~ 44904326 (-) True XLOC_004404
TCONS_00008500 lncRNA downstream 461429 44889048 ~ 44893409 (-) True XLOC_004403
TCONS_00008357 mRNA downstream 106746 45244618 ~ 45248092 (-) True XLOC_004413
TCONS_00008354 mRNA downstream 138154 45199369 ~ 45216684 (-) False XLOC_004412
TCONS_00008355 mRNA downstream 138627 45199576 ~ 45216211 (-) False XLOC_004412
TCONS_00008353 mRNA downstream 155587 45187798 ~ 45199251 (-) True XLOC_004411
TCONS_00008352 mRNA downstream 169046 45174520 ~ 45185792 (-) True XLOC_004410
TCONS_00008361 mRNA upstream 209 45370505 ~ 45385803 (-) False XLOC_004414
TCONS_00008363 mRNA upstream 5745 45376041 ~ 45395602 (-) False XLOC_004414
TCONS_00008362 mRNA upstream 5745 45376041 ~ 45395602 (-) True XLOC_004414
TCONS_00008364 mRNA upstream 31312 45401608 ~ 45420212 (-) False XLOC_004415
TCONS_00008365 mRNA upstream 32229 45402525 ~ 45420334 (-) True XLOC_004415
TCONS_00008317 other downstream 741104 44606851 ~ 44613734 (-) False XLOC_004396
TCONS_00008303 other downstream 1015618 44337157 ~ 44339220 (-) True XLOC_004385
TCONS_00008295 other downstream 1231380 44123327 ~ 44123458 (-) True XLOC_004381
TCONS_00008250 other downstream 3979712 41375011 ~ 41375126 (-) True XLOC_004339
TCONS_00008244 other downstream 4270475 41078191 ~ 41084363 (-) True XLOC_004334
TCONS_00008372 other upstream 61237 45431533 ~ 45435014 (-) False XLOC_004416

Expression Profile

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