RNA id: TCONS_00008365


Basic Information

Item Value
RNA id TCONS_00008365
length 2855
RNA type mRNA
GC content 0.50
exon number 13
gene id XLOC_004415
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 45401608 ~ 45420334 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cgtTTGTTTACCGTTCGATGCGTCGCTCCGGTGCGTGTCTCATTCCCGTCCGTCTCCGTTGAGTCACCGGACAGTGTTCATGTTGTGCGGGCTGCCGTTCTCCGCCGCTCATCTGTGTAAATATGACGGGAGAGAAGATCCGCTCGGTGCGCAAAGAGCGCAAGTCGGGTTTGGATCTACTGGAGCCGGACGAGGAGCCCGCGGCCACCGGGCCCGCCAAACACCGGGGCAGCAAGATCTTCAGCGGCGGGAACCACAGGATCAGCCGCTCCAGCTCCAGCCCCGGGGACCCTGACGGAGCCTATCCCGTGCATGAGTGCGTGTTCCGGGGCGACGTGAGGCGGCTGTCATCGCTCATCCGCACGCAGAACATCGCGCAGAAGGACGTGCACGGAAACACTCCTCTTCATCTGGCCGTCATGATGGGTCACAAAGAATGTGCTCATCTCCTGCTGGCCCATAATGCACCAGTGAAGGTGAAAAACGCTCAGGGATGGAGTCCGCTCGCGGAGGCCATCAGCTACGGAGACCGGCAGATGAtcacAGCTCTGCTGCGCAAACTGAAACAGCAGTCCAGAGAGAGTGTGGAGGACAAGAGACCCCGACTGCTGAAAGCACTCAaagagCTTGGAGATTTCTATCTAGAGCTGCACTGGGACTTCCAGAGCTGGGTGCCTTTACTCTCCCGGATTCTACCGTCTGACGCCTGCAAGATCTACAAGCAGGGGATCAACATCCGtctggACACTACACTGATAGACTTCACTGATATGAAGTGTCAGCGTGGAGATCTGAGCTTCATCTTCTGTGGAGACGCTCCTCCGTCAGAGTCCTTCGTGGTGCTGGACAATGAGCAGAAGGTGTATCAGCGCATACATcacgaggagtcAGAGATGGAGACGGAGGAGGAGGTGGATATCCTGATGAGCAGTGATGTGTACTCCGCCACTCTCTCCACTAAATCCATCACCTTCTCGCGCGCTCAGACCGGCTGGCTCTTCAGAGAGGACAAAACGGAGCGCGTGGGGAATTTCCTGGCTGATTTCTACATGGTGAACGGGCTGGTTCTGGAGTCGCGGAAGAGACGGGAACACCTGAGCGAGGAGGACATCCTGAGGAACAAGGCCATCATGGAGAGCTTCAGCAAAGGAGGAAGCCTCATCGAGCAGAACTTCGAGCCGATGAGGCGGCAGTCTCTGACCCCTCCATCACCCAACACTATCTCCTGGGAGGAGTACATCACTGCTGAGACCGGGAAagCTCCTCATCTGGGTCGAGAGCTGGTGTGTAAAGAGAGCAAGAAGAACTTTAAAGCCACAGTAGCCATGAGCCAAGACTTCCCTCTGGGCATCGAGTCGTTGTTGAATGTGCTGGAGGTCATCGCACCCTTCAAGCACTTTAATAAGCTCAGAGAATTCGTTCAGATGAAACTCCCGCCTGGATTTCCTGTCAAACTGGACATCCCGGTTTTCCCCACCATCACTGCCACCGTGACCTTTCAGGAGTTCCGTTACGATGAATTCGACGAAAGCATTTTTACGATTCCCAGCGACTACAAAGAGGATCCCAGCCGCTTCCCAGACCTCTGAGCTGCTTCACGTCCCACCTTACCCCGCTGTCCCGTCTCCATCTCGCCTCCATCCCTCCGGTGACCAGCAGATGGAGCCCGGCGCGTTTCACGTAGAAAATACTTGATGTAATATGGACATAAAGGGATTGCGTTGAAAACGGCGCGTAGGGAAGGGAAGGCCACTGCTGTCCGAATATACGGGACTCTCCTGCACTACATGATCAAGCTCTGTTCTGAGTTCTGCGCGAGAAATCTCCGATTGTGTGTCGGAGCTCAGGACAGTGCGGTACGTTAGAAACACGGCGGCTAGTCACTTCACGTCACCTGGCAGGAAAATATGGCATTATAAATTATTACATAAGCCGCGTTTTCATATATATCTTTGTACAACTGTTACAAACTTGTATACTTCACTTAAAAGCAAAGTGTATATTTAGGAACGAAGCGGAAGGCGTCTGTATATGATTTGAAATCTGTCGCAGAATACTATGTAAATGTCATTTCTACGAGTTTCTTTGCGCAACTTGTAAATATATAACCTGCTCTGGTTCCTGTTTTTGTTGCATTATGGGCTCACTTTCTCCTTCACTGCATTTCCGGTGCTTTAGTTCACCTGCTTTACTTTTCCTCACGTCCTAATAACTAGCTGACGATCTTACAGGGCCAGATGTCGATGTAGCAGAACATGTTTTCGCCTGTAGATTTGGTTTGGCTTTATGATAGATGGATGTAAATACATGCAAACTGAAACATGTTTTCTCCAGTGTAGTATAATTGACATGTATAACTGACGAGTATGTTTATTGAGATATTAGTGTCAAATGTTTCCGGAGACGTTGGGTAAAAGCCCTCAAGATACGGCGACGGCTTATTTCATGAGTGTTTGATCTGTTTTTGCTGTGTGCCGAGGGAAAAGGAGTTAGCGTCACGTTTGCACCAGCAATATCCCGTTGGAAAAGTACAGTTCCTCTTTTATGTCTCTTGTGTTTTGGTTTTTCCTCTTCCGAATGGAAACGAGCTGCAACTCTTCCATCACCCACTACTGGCTAGTGTGGAGAACTCCTgtgttttgctgtgttttttattttattttttattattattgttttttgttacCAGCTTCTTTTCCTGTGTTTGATGTTACTGTTTTTAGCTTTATGACTTCAGTACCCTTCAGACTTTCTCCCAGACGCATTGAACTCCCTGACGTACAGCGGGAACCTTGTATGAACCTGCTGCACTTTTACATGACaaattgtaattaataaaatgtCCACGTATCACG

Function

GO:

id name namespace
GO:0010869 obsolete regulation of receptor biosynthetic process biological_process
GO:0006621 protein retention in ER lumen biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005102 signaling receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3892 Predicted to enable signaling receptor binding activity. Predicted to be involved in protein retention in ER lumen. Predicted to be located in endoplasmic reticulum membrane. Predicted to be active in cytoplasm. Orthologous to human ANKRD13C (ankyrin repeat domain 13C).

Ensembl:

ensembl_id ENSDART00000163185

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008360 lncRNA downstream 42869 45359112 ~ 45359656 (-) False XLOC_004414
TCONS_00008356 lncRNA downstream 195486 45206467 ~ 45207039 (-) True XLOC_004412
TCONS_00008347 lncRNA downstream 253613 45143497 ~ 45148912 (-) False XLOC_004408
TCONS_00008348 lncRNA downstream 253613 45147186 ~ 45148912 (-) True XLOC_004408
TCONS_00008501 lncRNA downstream 498199 44901303 ~ 44904326 (-) True XLOC_004404
TCONS_00008363 mRNA downstream 6923 45376041 ~ 45395602 (-) False XLOC_004414
TCONS_00008362 mRNA downstream 6923 45376041 ~ 45395602 (-) True XLOC_004414
TCONS_00008361 mRNA downstream 16722 45370505 ~ 45385803 (-) False XLOC_004414
TCONS_00008359 mRNA downstream 16923 45356453 ~ 45385602 (-) False XLOC_004414
TCONS_00008358 mRNA downstream 32229 45354838 ~ 45370296 (-) False XLOC_004414
TCONS_00008366 mRNA upstream 6275 45426609 ~ 45429199 (-) False XLOC_004416
TCONS_00008367 mRNA upstream 6424 45426758 ~ 45433419 (-) False XLOC_004416
TCONS_00008368 mRNA upstream 9019 45429353 ~ 45434959 (-) False XLOC_004416
TCONS_00008369 mRNA upstream 9750 45430084 ~ 45435006 (-) False XLOC_004416
TCONS_00008370 mRNA upstream 9750 45430084 ~ 45435014 (-) False XLOC_004416
TCONS_00008317 other downstream 788791 44606851 ~ 44613734 (-) False XLOC_004396
TCONS_00008303 other downstream 1063305 44337157 ~ 44339220 (-) True XLOC_004385
TCONS_00008295 other downstream 1279067 44123327 ~ 44123458 (-) True XLOC_004381
TCONS_00008250 other downstream 4027399 41375011 ~ 41375126 (-) True XLOC_004339
TCONS_00008244 other downstream 4318162 41078191 ~ 41084363 (-) True XLOC_004334
TCONS_00008372 other upstream 11199 45431533 ~ 45435014 (-) False XLOC_004416

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_01639496_01661857.mRNA True 3228 mRNA 0.47 13 CI01000306 1639065 ~ 1663148 (+)
bowfin (Amia calva) AMCG00004850 True 1044 mRNA 0.48 10 CM030140.1 5780974 ~ 5796393 (+)