RNA id: AMCG00004850


Basic Information

Item Value
RNA id AMCG00004850
length 1044
RNA type mRNA
GC content 0.48
exon number 10
gene id AMCG00004850
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 5780974 ~ 5796393 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACAGCACTCCTGAGAAAGCTGAAACAGCAGTCCAGAGAGAGCGTAGAGGACAAGAGGCCTAGGTTACTCAAAGCCCTGAAAGAGCTTGGAGATTTCTACTTAGAGCTTCACTGGGATTTTCAAAGCTGGGTGCCTTTGCTTTCCCGAATCCTGCCTTCAGAtgcttgtaaaatatataagcaAGGTATCAACATCAGGCTCGACACCACGCTCATCGACTTCACAGACATGAAGTGTCAACGCGGGGACCTCAGCTTCATTTTCAACGGCGACGCCGCCCCCTCCGAATCCTTCGTGGTGCTGGACAATGAGCAGAAAGTGTACCAGAGGATCCATCACGAGGAGTCGGAGATGGAGACGGAGGAAGAGGTGGATATTTTAATGAGCAGCGATATTTATTCCGCGACACTCTCCACCAAATCCATTACCTTTGCCCGGGCCCAGACCGGCTGGCTATTCAGAGAAGACAAAacgGAAAGAGTGGGAAATTTCCTGGCGGATTTCTACTCTGTGAATGGTTTGGTTTTGGAGTCAAGAAAGCGAAGGGAACATCTCAGTGAAGAAGACATTCTGAGGAACAAGGCATTGATGGAAAGTCTCAGTAAAGGAGGAAATTTAATTGAGCAGAATTTTGAGCCTGTGCGGCGGCAGTCTCTCACCCCACCTTCACCAAACACTATTTCCTGGGAGGAGTACATCTCGGCCGAAAATGGAAAAGCCCCTCACCTTGGTAGGGAGCTGGTCtgcaaagaaagcaagaaaaactTCAAAGCAACTATAGCCATGAGCCAGGACTTCCCCTTGGGTATTGAGTCGTTATTAAATGTTCTAGAGGTAATAGCACCTTTTAAGCACTTTAACAAGCTCAGAGAATTTGTTCAAATGAAACTCCCTCCTGGATTTCCCGTCAAACTAGATATACCCGTGTTCCCCACCATTACAGCAACTGTGACATTTCAGGAGTTCCGCTACGATGAATTTGAAGACGCCATCTTCACCATCCCCAGTGACTATAAGGAGGACCCCAGCCGATTCCCTGACCTT

Function

GO: NA

KEGG:

id description
K21437 ANKRD13; ankyrin repeat domain-containing protein 13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180625 lncRNA upstream 319120 5461492 ~ 5461854 (+) True G143630
TU180496 lncRNA upstream 922810 4852163 ~ 4858164 (+) True G143526
TU180401 lncRNA upstream 1528885 4251709 ~ 4252089 (+) True G143447
TU180391 lncRNA upstream 1542114 4218037 ~ 4238860 (+) True G143440
TU180364 lncRNA upstream 1647065 4133455 ~ 4133909 (+) False G143414
TU180738 lncRNA downstream 703843 6500236 ~ 6500721 (+) True G143721
TU180800 lncRNA downstream 838665 6635058 ~ 6635410 (+) True G143772
TU180866 lncRNA downstream 1812508 7608901 ~ 7609824 (+) False AMCG00004864
TU180890 lncRNA downstream 1876423 7672816 ~ 7692264 (+) False AMCG00004868
TU181008 lncRNA downstream 2077220 7873613 ~ 7874434 (+) True G143923
AMCG00004849 mRNA upstream 36639 5743931 ~ 5744335 (+) True AMCG00004849
AMCG00004851 mRNA upstream 40456 5730970 ~ 5740518 (+) True AMCG00004851
AMCG00004845 mRNA upstream 54764 5724587 ~ 5726210 (+) True AMCG00004845
AMCG00004847 mRNA upstream 73023 5657744 ~ 5707951 (+) True AMCG00004847
AMCG00004846 mRNA upstream 140261 5631156 ~ 5640713 (+) True AMCG00004846
AMCG00004852 mRNA downstream 4020 5800413 ~ 5816834 (+) True AMCG00004852
AMCG00004856 mRNA downstream 520508 6316901 ~ 6330455 (+) True AMCG00004856
AMCG00004855 mRNA downstream 730237 6526630 ~ 6535844 (+) True AMCG00004855
AMCG00004862 mRNA downstream 1371599 7167992 ~ 7178903 (+) True AMCG00004862
AMCG00004863 mRNA downstream 1393962 7190355 ~ 7219055 (+) True AMCG00004863
TU180621 other upstream 356853 5423703 ~ 5424121 (+) True G143626
TU180426 other upstream 1408885 4371709 ~ 4372089 (+) True G143471
TU180351 other upstream 1671319 4109022 ~ 4109655 (+) True G143404
TU180311 other upstream 1831137 3949426 ~ 3949837 (+) True G143366
TU180140 other upstream 2385816 3377815 ~ 3395158 (+) True AMCG00004793
TU180912 other downstream 1932996 7729389 ~ 7731000 (+) False AMCG00004870
TU181952 other downstream 5866288 11662681 ~ 11663368 (+) True G144677
TU182286 other downstream 6984187 12780580 ~ 12781170 (+) True G144940
TU183002 other downstream 9587850 15384243 ~ 15384612 (+) False AMCG00005105
TU183561 other downstream 11968864 17765257 ~ 17771525 (+) True G145932

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00008365 True 2855 mRNA 0.50 13 NC_007122.7 45402525 ~ 45420334 (-)