G143630


Basic Information

Item Value
gene id G143630
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 5461492 ~ 5461854 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU180625
tgcctaatattgtgtaggtccccttttgccgccaaaacagccctgacctgtcgaggcatggactccactagacctctgaaggtgtgctgtggtatctggcaccaagacgttagcagcagatcctttaagtcctgtaagttgcgaggtggggcctccatggatcagacttgtttgtccagcacatcccacagatgctcgattggattgagatctggggaatttggaggccaagtcaacaccttgaactcgtgattcatcagaccaggccaccttcttccattgctccgtggtccagttctgatgctcacatgcccattgtaggtgctttcggcagtggacaggggtcagcatgggcaccctgac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU180625 True 363 lncRNA 0.53 1 5461492 5461854

Neighbor

gene id symbol gene type direction distance location
AMCG00004839 NA coding upstream 94604 5362128 ~ 5366888 (+)
AMCG00004834 atpaf1 coding upstream 396079 5058465 ~ 5065413 (+)
AMCG00004833 NA coding upstream 403403 5003320 ~ 5058089 (+)
AMCG00004827 tm2d1,LOC107669801,LOC107715116,LOC107653653,LOC107731529 coding upstream 861171 4591908 ~ 4600321 (+)
AMCG00004825 NA coding upstream 1143158 4310768 ~ 4318334 (+)
AMCG00004846 LOC106613881,LOC107709201 coding downstream 169302 5631156 ~ 5640713 (+)
AMCG00004847 NA coding downstream 195890 5657744 ~ 5707951 (+)
AMCG00004845 NA coding downstream 262733 5724587 ~ 5726210 (+)
AMCG00004851 srsf11,LOC103035453,LOC105898987 coding downstream 269116 5730970 ~ 5740518 (+)
AMCG00004849 NA coding downstream 282077 5743931 ~ 5744335 (+)
G143526 NA non-coding upstream 603328 4852163 ~ 4858164 (+)
G143447 NA non-coding upstream 1209403 4251709 ~ 4252089 (+)
G143440 NA non-coding upstream 1222632 4218037 ~ 4238860 (+)
G143414 NA non-coding upstream 1327583 4133275 ~ 4133909 (+)
G143405 NA non-coding upstream 1348004 4113261 ~ 4113488 (+)
G143721 NA non-coding downstream 1038382 6500236 ~ 6500721 (+)
G143772 NA non-coding downstream 1173204 6635058 ~ 6635410 (+)
G143923 NA non-coding downstream 2411759 7873613 ~ 7874434 (+)
G143962 NA non-coding downstream 2516792 7978646 ~ 8049310 (+)
G143970 NA non-coding downstream 2547677 8009531 ~ 8012018 (+)
G143626 NA other upstream 37371 5423703 ~ 5424121 (+)
G143471 LOC107575789 other upstream 1089403 4371709 ~ 4372089 (+)
G143404 LOC107757485,LOC107715094,LOC107588062,LOC107653629,LOC106613586,LOC107592717,LOC107669813 other upstream 1351837 4109022 ~ 4109655 (+)
G143366 NA other upstream 1511655 3949426 ~ 3949837 (+)
AMCG00004793 NA other upstream 2066334 3377815 ~ 3395158 (+)
AMCG00004864 NA other downstream 2147047 7608901 ~ 7624070 (+)
AMCG00004868 samd13 other downstream 2210962 7672816 ~ 7692361 (+)
AMCG00004870 rpf1,LOC107745333 other downstream 2256419 7718273 ~ 7734059 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other downstream 4238313 9700167 ~ 9750777 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other downstream 4486556 9948410 ~ 10015424 (+)

Expression


Co-expression Network