AMCG00004834 (atpaf1)


Basic Information

Item Value
gene id AMCG00004834
gene name atpaf1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 5058465 ~ 5065413 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004834
ATGTGCGACGCAGGGGAAGGCAAAATGGCTGCCGCCGTGGTCCAGATGTCGTGTCTGTACCGAGGCATGCTGGCTGTCAGACACACGGGAATCAGGTCGCTCATCCCCGGGGTGGCACCGCAGCACCTCCGGGTCTTTTCGGTCCGCAAAGAGCCCGAACTGGAGGCCAACCCTTTCTACAACAAATACCAGGACAAGATCCAGGCGTTGCGCAAAGCTAAACCTCAGGAGTATAATGCACGTCTGGAGAAGAGGACGGAGGTGAAGAAGCAGGCTGTTGGCCATTCCAAGCAGACCGAGTTCATCAATATAATGGAACAGCAGactctAGAGTCCATCTTCAATATTGACAAGGTGAAAGACAAGACCGGGGAAGAGATTGGCCAGatATGGATGCAGTATTTTGCAAATAAAGACACCATCTGTGCAGTCATACctggggAAACATTTGAAACACTCTCCAGCAGAGCTAGGTCTTGTCCCACATTTATATCCACCAGATGGTGCTCTAGTGTAGGGCAGGTAGCTGCTGTATCTCACTGCATTGCTCTGTCTGGCTCTCAGTTCTTGTATGCGCTGCCGCAGCAGGAGGGCTACGAGTTCTTCTTGGGTCAGTGGTCTGGCCAGCAGCTGCACTTCACTTCCTTGATAAATATTCAGACGATGGGAGAGAACGCCCCGAGTCAGCTTATTCTGTACCACTACCCGGAGCTGCAGAGGGACAAGGGCATCGTGCTGATGACCGCCGAGTTGGACCCCAAGTTCCTCGACGTTCACCAGGCCCAGTGCTTAGCCAATCAGGTGCAGCTGTTCTATGGCACACGGCGGCAGGAGACCTTCTGGTTGGTAGAGACGTTCAACCACAAGCCGGCAGACTTCAGGCACATGGCAGTGATTGCGGAGCTGGAGCAGAATGGGCTGGGGGCCTTGGTCACTCAGGAGGCCTAG

Function

symbol description
atpaf1 Predicted to be involved in mitochondrial proton-transporting ATP synthase complex assembly. Predicted to act upstream of or within protein-containing complex assembly. Predicted to be active in mitochondrion. Is expressed in immature eye and optic tectum. Orthologous to human ATPAF1 (ATP synthase mitochondrial F1 complex assembly factor 1).

NR:

description
PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 1, partial

GO: NA

KEGG:

id description
K07555 ATPeAF1, ATPAF1, ATP11; ATP synthase mitochondrial F1 complex assembly factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004834 True 948 mRNA 0.54 8 5058465 5065413

Neighbor

gene id symbol gene type direction distance location
AMCG00004833 NA coding upstream 376 5003320 ~ 5058089 (+)
AMCG00004827 tm2d1,LOC107669801,LOC107715116,LOC107653653,LOC107731529 coding upstream 458144 4591908 ~ 4600321 (+)
AMCG00004825 NA coding upstream 740131 4310768 ~ 4318334 (+)
AMCG00004826 NA coding upstream 756681 4289809 ~ 4301784 (+)
AMCG00004821 NA coding upstream 832653 4224907 ~ 4225812 (+)
AMCG00004839 NA coding downstream 296715 5362128 ~ 5366888 (+)
AMCG00004846 LOC106613881,LOC107709201 coding downstream 565743 5631156 ~ 5640713 (+)
AMCG00004847 NA coding downstream 592331 5657744 ~ 5707951 (+)
AMCG00004845 NA coding downstream 659174 5724587 ~ 5726210 (+)
AMCG00004851 srsf11,LOC103035453,LOC105898987 coding downstream 665557 5730970 ~ 5740518 (+)
G143526 NA non-coding upstream 200301 4852163 ~ 4858164 (+)
G143447 NA non-coding upstream 806376 4251709 ~ 4252089 (+)
G143440 NA non-coding upstream 819605 4218037 ~ 4238860 (+)
G143414 NA non-coding upstream 924556 4133275 ~ 4133909 (+)
G143405 NA non-coding upstream 944977 4113261 ~ 4113488 (+)
G143630 NA non-coding downstream 396079 5461492 ~ 5461854 (+)
G143721 NA non-coding downstream 1434823 6500236 ~ 6500721 (+)
G143772 NA non-coding downstream 1569645 6635058 ~ 6635410 (+)
G143923 NA non-coding downstream 2808200 7873613 ~ 7874434 (+)
G143962 NA non-coding downstream 2913233 7978646 ~ 8049310 (+)
G143471 LOC107575789 other upstream 686376 4371709 ~ 4372089 (+)
G143404 LOC107757485,LOC107715094,LOC107588062,LOC107653629,LOC106613586,LOC107592717,LOC107669813 other upstream 948810 4109022 ~ 4109655 (+)
G143366 NA other upstream 1108628 3949426 ~ 3949837 (+)
AMCG00004793 NA other upstream 1663307 3377815 ~ 3395158 (+)
AMCG00004788 NA other upstream 1898256 3123081 ~ 3160209 (+)
G143626 NA other downstream 358290 5423703 ~ 5424121 (+)
AMCG00004864 NA other downstream 2543488 7608901 ~ 7624070 (+)
AMCG00004868 samd13 other downstream 2607403 7672816 ~ 7692361 (+)
AMCG00004870 rpf1,LOC107745333 other downstream 2652860 7718273 ~ 7734059 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other downstream 4634754 9700167 ~ 9750777 (+)

Expression


Co-expression Network