AMCG00004833


Basic Information

Item Value
gene id AMCG00004833
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 5003320 ~ 5058089 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004833
ATGAGACTGGCTACCTTCTCTTGGCTGGTCATAGCTGTCACTTCAGCTGCCTCCTCCCAGGGCCTCATCCGACGTAACACAGGAGTCCAGGTTGGCAGGGGACAGGCGGTGTATGTGACAGATAATGAACTGCAATTCGACATCCCGAAAGAGCTGGACACATGCAAGGTGGAGGTGGTGCTGAATGAGCCAGTTACACAGAGGGTTGGCAGATTTACTCCTCAGGTGTTCGATTGCCACTTCCTACCCGACGAGGTGAAATACATCCACAACGGGTGTCCCCTTCTGGACGAGGACAGTGTCATGCTAAGAATCTACAGGTTCACAGAGAAGGAAACCTTTGTGGAGACATTCCTGCTGAAGGTCCAGGTCATTGATCCCGAACACAGTTTGATCCGCTTGGGAAAGCTCACTATGGAAGTGCCCGAGTTCCATGGTGTGTCCAACGCCATGGACGGGCGAGTGGTGACTTTCCGACAGAGGCCAGGCACCCTCTGCACCGTGAGGTTAATGATCTCTGAGACCCACGTCCCCGCTCAGGGACAGCTAGTCACTGTAGACCCGTCCAGGACTCTCAAGAAAGACACACCACTAGCGTCTGGGCTGAACCCAGGACTTAGAAAAGGGAGACAGACAGGCCTCCCTTGTTCTGGCAACAAAGCCTGCTTCCCTGGCATGAAGGAAGTGCGTTTCCTGAAGGCCAACTGTGAGGACTTCCTGCATATGGGTCTGAAATACCAGCACCTCAGCCCCCCATCTCCTGACATTGACTACATCCCGCTCAGGGTGGAGATCCGAGACCAAACCACCAGGGCGCTGCTAGAGATGGAGAATGCTTGGATCCCAGTGGCAATCCGGGGTGCCATGTTGAACCAGGCCCCCCATGCGGCCTTCATGTCCATGTTTATCCTGGAGGTGGACCAATTCATCCTGACCCCTCTGTCCACCGCCTCAGTGGACGCAGAGGATGATGAGACTCCCCGGTCTGGCCTGGTCTTCAGCGTCACCAAACCCCCTGCCGAAGGCTACATCACCCACCTGGACGACCACACCAAGCCTGTCTCTTCCTTCAGCTGGCAGGATCTCAATGAAATGAAGATCGCCTACCAGCCCCCCAACAGCAGCCACACGGACAGAAGAAACTATGAGGTGGAATTTGTGGCTATTGATGCATTCTTTGTCAGCAGTGGTCCAGTCATGGTCCATTTCTCGATCAGGACAGCCGAGACCAACGCTCCACGGGTCTCGTGGAATATGGGACTGGATTTGTTAGAGGGCCAGACCAGACCAATAACCTGGGAGAATTTCCAGATCGTCGACAATGACAACATTAAAGCCGTGTACCTGGTGGCGGTGGACGGCCCTCTGCACGGACACCTGAGTGTCAGAGGGGGGAAGGGGTTCATGTTCAAAGTTCAAGACATCAAGGACGGGGCGGTGCGGTATCACCATTCGGACAGCGACACCACCAAAGACTACATCGTCTTCCGCATCTCGGACGGGCGTCACAGTGTGAGGCACAAGTTCCCCATCAACATCCTCCCCAAGGACGACACGCCCCCATTTCTCATCAACAACGTGGCCTTCGAGGTTGAAGAGGGGGGTAGCGTGCTGGTAGAGGAGTACATGCTGATGGCCTCTGACCTTGACTCCAGCGATGACTACATATTGTACACACTCACCAGGCTGCCGCTAGCTGGAGAGATCATCAAGAAACACTCCCCACAGCAGCCAGTTAAGTACCCAATTATATGGATCCCAGTGAAGACCTTCCTACAGAGAGACCTGTTTCAGGGGCTCATCTACTACAGACACCTGGGGGATGAGGTGTTTGAGGATTCATTTGACTTCACTCTGTCTGACAGCCACCAACCCCCAAACCTTTCACACAAGCACACTGTGGTGGTTCACATTTCTCCAGTGAAGGACCAGCTGCCAGTGGAGGTTCTGGGAAGTGTCCGTGCCATCACAGTGAAGGAAACTGAGGTAGCCTACATCTCCAAGAGCCACCTACACTTCCGGGACACTGAGTCACCTGACACTGACCTCATGTACTTTGTCACCCAGCCCTGCTTCGCCCCAGCCAGACCTGGGTTACAAGATGCTGGCAAGCTGTTTTATACTGACAGCATAAACACTATGAAGAAAGATCCCTCAGTTCCTCTACTGAAGTCCTTCACACAGcatGCAGTCAATCATCTGAAAGTGGGTTATTTGCCCCCACTGAGGGACATTGGCACAGAGCCTCTCTTCGTGCAGTTCATCTTCTCTGTGAGTGACCAGCAGGGTGGCACTCTCTCCGGGCTGGTCTTTAACATCACAGTTACACCAGTGGACAACCAAACACCCGAGATATTCACCAATGCCTTGAAGGCTGAGGAGGGTGGAGGCAGTTTCATCACTGAGGAGAACTTGCTGGTGACCGACGTGGACTCCCAGGAGAGTGACCTGCGGGTGCAGCTGAGGACGAGGCCGCACCACGGCAGGGTGGAGCTGCAGGGGCTGGTCATGCTGGAGGGAGACTACTTCACCCTGCAGGAAGTCCGAGGCCTCAGAGTGCGCTATCTTCATGATGACTCTGAGACATTTGAAGACAGTGTGGGTTTCACGGTGACAGATGGCCTCAACTCTGCCAGTGGGACACTCACCGTGCAGATTCTGCCAGTGAATGATGAACCTCCAGAGCTCGGGCCAGGGCTGAAGTCAGGGCTGGAGTGTCCTGAGGGAGGTCAAGTGCTGATCACAGCCGAGTACCTGTACGCTACGGATGCGGACAGTGACGACGCCAGGCTCACCTACATGCTGGGCCGCACTCCTGCCCATGGCGTGGTGCAGAAGGCAGGGGTCACGGTGGACAAATTCTCTCAGCTGGATGTGGTACAGAGGCTGATTTCCTATGTGCACACAGGTGGTGAGATTGGTCCCAGCCCCATCCCAGACACCGTCACTCTGATTGTGTCTGATGGAGAGGCAGGGACAGTGGACAGCTGTTGCCAGGATGATGCCCACCCTCCCCCAGTGCCCTTACATGGCTCACTTCCTGTCTATGATCTCAACATCACTGTACTTCCTGTAAACAACCAGCCCCCTTCGATATCTGTGGGGGAGATGTTTGTGGTGGATGAGGGTTCCacagcctgtctgtctctggtgGCCCTGAGCGCCTCTGACCCCGACACCTTCTCTGAGGATCTGCTGTTCCTCCTGGAGTCTCCACCTCAGCATGGCTTCTTGGAAAACACCCTCCCATCACCTGGACATGAGAAAAGCAATGCAGGCTTTAATGTGGTTTCTTTCAGCCTCCAGCACCTAAGTTCTGGCTACATCAACTATGTTCAGTCCCAGCATCAGGGTGTTGAACCCACAGCTGACCACTTTATGGTTGCAGTCAGTGACGGCCTACACAAGTCCACGGCGATACCTTTTTACGTCATCATTAACCCCATCAATGACGAGGGCCCCAGCCTCCTTGTCAGGAACATCACAGTCACTGAAGGAGGGATGGGTGATCTTAGCCCAGCAGTCTTGGATGCCATGGATTTGGACACCCCCCCAGACCCCTTAACCTtctccctccttgcccctccAGCTCATGGGACCCTCCTGAATGGAATCTATGGGCTCCAGATGAGCCGCTATAAACAAATGGGCTCTGAGCTCGCATACCAAAATCTAGCAGTTCACTCCTTTACCCTGCAGCAGCTTCGACAAGGAATGAAGATAGTCTACATGCATGATGGCACAGAAACCCTCAAGGACAGCGTCGCCATTCAGCTGACAGATGGCAAACACACAGTCCAGGGGACAGTGCATGTCCGCATCATACCAGTCAACGATGAAAAGCCTCGGCTGTTAAAGAATGCAGGTCTGGAGGTGGAAGCAGCAGAGAATAAGGTGATATCCAGTGTGGTTCTGGAAGCAGAAGATCAAGACACCCCCAGTAGTGGGCTCTACTATATCCTCAATGTCTGTCCCAAGTTTGGTCAACTTCAACTGAAGACAGCAGGGGGCTGGACTTTGCTTCAGCCTGGTATGAATTTCACCCAGGAGGATGTGGATATGAACCGCCTGATGTATTCACACACAATCATTCTGGGGGTCAGGGGCCACGACAGCTTTCGCTTCCACCTCACTGACCTGGACAACGAGAGCCCCACCCAGAGTTTCTTCATCTCCCTGCGTAACATTGACAAAGGTGACATTGTTCTTCTCACCAAACCCGTAACTCTAACCGAGGGTGACAGGGTGACCTTGACGACAGATGTTCTCATAGCAACAGATGGCAGCGGCAAAGTGGAGGAGCTGCTGTACGCCATCTCTGTGCCACCTGTCCGTGGTCATGTCGAGTCCATCAATTATCCCGGCCTGCCCATCGCTGCCTTCAGCCAGTTGGACGTTGCGGCTCAGAGAGTGTGCTATGTACACGACAATAGCCACGAGGCCGGGGAAGATTCCTTTAGCTTTGTGATTAGTAATGGGCTGATCACGAAGAACGGCTCCCTGAAATTCATCATTGAGCATACGGATCGCATCCTCCCGACACTACTTCACAACAAAGAACTCGTGCTGTTGGAAGGAACTGTGGGGACTATAGCCCGAGATGTCCTTGAGCTCACTGACCCAGACACGGCACCCCACAACCTCACCTACTCTATCGCTCAGCATCCCCAACATGGCAGGCTTCTCCTACAGGGACAGCCTCTGTCCAAGGGCTGCTTCACTCAGGCTGACGTCAACAACCTGGACATCACCTACCAGCATGATGGAGGGCCCGCGGAGAATGACAAGTTCTCCTTCACGGCTTCTGACGGGACCAACCATGGCTTCCTCCTTTATGGCCAGTTGAGCCAAGAGCCTGCAGTTTTTACAATACAGGTGGACCACATTGACAAGGCCTTGCCCAGAGTTGTAACTAAGGAGACTCCCAGCATAGTGGAGAACCTGAAGGAGGGAAAGCAGGGCATCTATATTACCTCTCGTCACCTGAAGGCCTCTGACCCTGACAGCGAGGACCAGGAGCTGGAGTTCACAATCCTCCGCCCACCGTTCTTTGGATACCTGGAGAATGCCATCACAGGTGGCTATGTCAGAGGCCGCTTCACCCAGAAGGATTTGAACCAGCGTGCTATCCGCTACATCCTAAACCCAGCCATCGAGGTCACAAGGGATAGCTTCGAGTTCAAAGTCAGTGATCCTACAGGAAACGCCATACTGCCTGAAGTTCTGGAGCTCAGGTGGTCCCACATTGAGCTGGCAGTGACGTGCTTCCGTGTCTGTGAGAACGTGGGCACCCTGTCTGTGCAGGTGGTGCGCAGTGGGGGCAGCGCGGAGCCCTCGTACATCGGCATTAAGGCAGAGGAGGGCACTGCAAAAGTGGGCAGAGATTTCACCCACAGTTCAGCCAGTCTGATCCAGTTTGATCCAGAGAATCATGAGAAGTTCGAGATCCTTCTGAAAGCACCAAAGAATGCAGTTATGGGTCAGAAGAATAAAGCCAATGTGGAGATTGTGGACCCAAGAGGAGggaactgtgacccAGAGGAGCTGAAACCGGAGGAGGAGATGACCGGTCACCATGATCTCTTCACACTACCCTCTGAAGGGTCACAGCCTGATGTGAGGACTGAAAAGAGACCAGAACAAGAGGGAGAGATTCCCTGGGGACGCCACAACTCCCCACCCCGGGGAGATGTCCCCGACACACACCGCTTCTTGGACTACGGTGGAGGGGAAGTCCAAGACCAGGCTTCACTTCCTAGAAAACGCCTACAAGTCTTAGGCAGCGCTAGGATTCGTCCCACAGGCATCGAGAGGAAAAATGGGGAGACTGTTTGGACgTACCATGGGATTATTCCTATGAGATTGGAGCAGAGAAGACATCCGAACCCAGGGTTGCCTCCAGCCCATTCTGACGTGCAGGCAATCCCTATCTGGGCCTggccctcctctcctctccatgTCAATAGATCTAATGATAGCCCACAGGGGGACTCCCCTCCACCTCACGCAGTGCAAGGGAGCAAGGCAAGGagaaaTAAGAGCCACGGCTGCCCTCCAGGTTGGGCCCTGAGAGGGAAGGACTGCTACACCTCCAGCACTGACAGTGCCAGCTGGGAAGGAGCAGAGCAGGCCTGTGCAACGATGTTTCATAGTCATCTCACAAGTGTTCACTCCGAGAAAGACATGAAGTGGCTGTGGAAATTTGCAGGGAAAATGCCATTTTGGATTGGACTGACAAACAGGGGTGTGACAGAGAACTGGACCTGGACCAATGGCCGTCCCCTGTCTTTTACAAACCTGAAGCTGCGCCGGCCATCGTCTTCTGGTCCACCGGGCCCCAGCTGTGTATTAGCACAGATGAGGAGAAAGTGGATGCCACAAAGCTGCAGCACAAGGCCTGAGCACAAATACATCTGCTCACTGCCAGCCTGGAAATACTAGTGGGCTTACCGACAGAATAACCTGGTGCCTCAGCAATGGCTTTAATTTAGACAGCTTTACCTGTggctgctgtttttgtgtgttttgtttttcacagtgcTGCTGACAGGTGCAATATACTAAATCATTAAACTGGTGATTGTGTGCTTCTGTTCTGTTGCTCTATCAATAATTCTCTAAAGTGTCCTTAACAACAAAGATAGGATGCTGTGCactaatttctttttttatgtcttgTGAAATATTTTCCTTAAACAGACCCTTGTGAGTGGGAATTGAACTAAAGACATTTAACATTGCTCATTGCTCAAGAAAGTTTTTTAGTCCTATCAGTGTCAAACCCCTGAACAACTTGTAATTCACATCAGAGCAACTTCAGTAAGTACTGGTGTTAAACAGACAATGGAACACAGTAAGCCGACAGAATAAAGTATATCTCTTTCCAGTAATAGCTGTACTTTTAACTGTCGGAACTATAAATAATCCTTAAAATCTGGCTCCTGCAGCAGCCCTCTGATTTTTTTTGATAACTCTGAAATGTCTTTCTGAATGAAGTTAATCTGGTCCAAAGTGAATCCTTTATTTCAAGGTCTAGCTCTCCACATCTGTGATTCACTGCAGAATCCATGAGACTGCAtgaataacatttttctttgggTGGTCTAAGATGTTTGCTTATATTTTAACTCTATAATCTGGTTTTGCcactttctgtaaatatttgtatttcttttttaaatggacaaaataaaacaaataaacattgcaaCCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004833 True 7214 mRNA 0.52 35 5003320 5058089

Neighbor

gene id symbol gene type direction distance location
AMCG00004827 tm2d1,LOC107669801,LOC107715116,LOC107653653,LOC107731529 coding upstream 402999 4591908 ~ 4600321 (+)
AMCG00004825 NA coding upstream 684986 4310768 ~ 4318334 (+)
AMCG00004826 NA coding upstream 701536 4289809 ~ 4301784 (+)
AMCG00004821 NA coding upstream 777508 4224907 ~ 4225812 (+)
AMCG00004822 NA coding upstream 812123 4163753 ~ 4191197 (+)
AMCG00004834 atpaf1 coding downstream 376 5058465 ~ 5065413 (+)
AMCG00004839 NA coding downstream 304039 5362128 ~ 5366888 (+)
AMCG00004846 LOC106613881,LOC107709201 coding downstream 573067 5631156 ~ 5640713 (+)
AMCG00004847 NA coding downstream 599655 5657744 ~ 5707951 (+)
AMCG00004845 NA coding downstream 666498 5724587 ~ 5726210 (+)
G143526 NA non-coding upstream 145156 4852163 ~ 4858164 (+)
G143447 NA non-coding upstream 751231 4251709 ~ 4252089 (+)
G143440 NA non-coding upstream 764460 4218037 ~ 4238860 (+)
G143414 NA non-coding upstream 869411 4133275 ~ 4133909 (+)
G143405 NA non-coding upstream 889832 4113261 ~ 4113488 (+)
G143630 NA non-coding downstream 403403 5461492 ~ 5461854 (+)
G143721 NA non-coding downstream 1442147 6500236 ~ 6500721 (+)
G143772 NA non-coding downstream 1576969 6635058 ~ 6635410 (+)
G143923 NA non-coding downstream 2815524 7873613 ~ 7874434 (+)
G143962 NA non-coding downstream 2920557 7978646 ~ 8049310 (+)
G143471 LOC107575789 other upstream 631231 4371709 ~ 4372089 (+)
G143404 LOC107757485,LOC107715094,LOC107588062,LOC107653629,LOC106613586,LOC107592717,LOC107669813 other upstream 893665 4109022 ~ 4109655 (+)
G143366 NA other upstream 1053483 3949426 ~ 3949837 (+)
AMCG00004793 NA other upstream 1608162 3377815 ~ 3395158 (+)
AMCG00004788 NA other upstream 1843111 3123081 ~ 3160209 (+)
G143626 NA other downstream 365614 5423703 ~ 5424121 (+)
AMCG00004864 NA other downstream 2550812 7608901 ~ 7624070 (+)
AMCG00004868 samd13 other downstream 2614727 7672816 ~ 7692361 (+)
AMCG00004870 rpf1,LOC107745333 other downstream 2660184 7718273 ~ 7734059 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other downstream 4642078 9700167 ~ 9750777 (+)

Expression


Co-expression Network