G143526


Basic Information

Item Value
gene id G143526
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 4852163 ~ 4858164 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU180496
aaaaaaactctgaagAGAGACGCCTTTGGAGTATTTTCTGCCAAGAACTGCAAAAAGATGTTTAAAGCTGCAGTTCAGGACAGGCGATCCGAAAGACTTGTGCCAAGAGGACGCGAGAAAGTGCGGCGGGACAGAGCCGAGCTCTTCAGACATCAGTCAAGGCTGCAGAATTACAGTGCTGAGAAACTTTGCACAATATGAATCGGACGACAAACATGCGCGCTTTGAAAACTTTTATATGCGATCTGGACTCTCGGCAACTAACTAAAAGAAGTTACGATATGGCGCCTGTGCAAAGCCACAGTTCCTACTCTTCACGGGACTTTCACTATTTGACCACCAGAGGGCGCTCCCACAATACAGTAACAGAGGATTAAAACTTCACTGCTTCTACTCGGCCAATCATGATTTACAATGCGTAAATCTGACATCTACAACCAGAGTAACTGCTCGGTGTGCTCAATCAAAAGTCataaaagaaagggaaaacacAAGGGGAACAAATGGACACAAGCCATAATTACAATCCCCCAACCTCGATCATCTTCATCAATCAAAATACTCCActgaaactaaaatacaattttccaaTTTGCTAAAATAATCCGTATAGATGCTGTCTGATTACTCTGTAGTGGGTGAAAATAGAACATTGCCTTCTCCTTTAAAACatgaactattattattattattattattattattattattgttgttgttgttaataataataataataataataataataaacaaattgttcattattttgaCAAGGTTTTGCTGGGTTATATTTTCAGCACcaagacagagagggaaaacaTGTGCATATCCATATTTTACACCTATTACGCTTTCACTTCTTCTTCAGGAGCACACCGTGATTTGTGAAGGGATCATGAGGAGAGTATCAAACAAGGGTTTTAGTCTGATTTAATAGAGCAAAAATCTGACTGGAGGCAATCATTTCCTCAGTTTCGACCGCATGCCAACAATCACATGAAAGctgaacattttattcaaatgttaatcCCTTTCAAGATTCACAACCCTCATTTATTCTGCTTCACTACACCGACAGGACACAACATGCAGAAggtgtacattttcattaagcTATATGTAAAGTCTGGCATTTAGGGGGAAATACGTATATTCTTCACTAAAAGTACTTAAACAGCCCATCCGTTCAGTggcattgttttgttgtgcatATGCAATGAAATGGCTGCTACTGGTAATCCTGGACTATTGCTTTCATATGACTGATTGCCTAATTTATCTGATAACTTTAATATGTACTatataaattacttttcttaAAGTAAATAACACATAGCCACACATATTAAAACGCATGCAATTGAGTGGTTGTGTAAAGTGCCTAAtacctttaaaatgaataacgTAGTTTCATTACAAGTTACATTTGTGTGTATGCAATTACTGACAAAACTGTAGCTGTTCTATTTAATTTACacagtatgtgtttttgttggttttctgcATGAAAGgatttattgtacatttgttttcattgatgcattattatgtgtttgtttcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU180496 True 1564 lncRNA 0.37 2 4852163 4858164

Neighbor

gene id symbol gene type direction distance location
AMCG00004827 tm2d1,LOC107669801,LOC107715116,LOC107653653,LOC107731529 coding upstream 251842 4591908 ~ 4600321 (+)
AMCG00004825 NA coding upstream 533829 4310768 ~ 4318334 (+)
AMCG00004826 NA coding upstream 550379 4289809 ~ 4301784 (+)
AMCG00004821 NA coding upstream 626351 4224907 ~ 4225812 (+)
AMCG00004822 NA coding upstream 660966 4163753 ~ 4191197 (+)
AMCG00004833 NA coding downstream 145156 5003320 ~ 5058089 (+)
AMCG00004834 atpaf1 coding downstream 200301 5058465 ~ 5065413 (+)
AMCG00004839 NA coding downstream 503964 5362128 ~ 5366888 (+)
AMCG00004846 LOC106613881,LOC107709201 coding downstream 772992 5631156 ~ 5640713 (+)
AMCG00004847 NA coding downstream 799580 5657744 ~ 5707951 (+)
G143447 NA non-coding upstream 600074 4251709 ~ 4252089 (+)
G143440 NA non-coding upstream 613303 4218037 ~ 4238860 (+)
G143414 NA non-coding upstream 718254 4133275 ~ 4133909 (+)
G143405 NA non-coding upstream 738675 4113261 ~ 4113488 (+)
G143403 NA non-coding upstream 748307 4102262 ~ 4103856 (+)
G143630 NA non-coding downstream 603328 5461492 ~ 5461854 (+)
G143721 NA non-coding downstream 1642072 6500236 ~ 6500721 (+)
G143772 NA non-coding downstream 1776894 6635058 ~ 6635410 (+)
G143923 NA non-coding downstream 3015449 7873613 ~ 7874434 (+)
G143962 NA non-coding downstream 3120482 7978646 ~ 8049310 (+)
G143471 LOC107575789 other upstream 480074 4371709 ~ 4372089 (+)
G143404 LOC107757485,LOC107715094,LOC107588062,LOC107653629,LOC106613586,LOC107592717,LOC107669813 other upstream 742508 4109022 ~ 4109655 (+)
G143366 NA other upstream 902326 3949426 ~ 3949837 (+)
AMCG00004793 NA other upstream 1457005 3377815 ~ 3395158 (+)
AMCG00004788 NA other upstream 1691954 3123081 ~ 3160209 (+)
G143626 NA other downstream 565539 5423703 ~ 5424121 (+)
AMCG00004864 NA other downstream 2750737 7608901 ~ 7624070 (+)
AMCG00004868 samd13 other downstream 2814652 7672816 ~ 7692361 (+)
AMCG00004870 rpf1,LOC107745333 other downstream 2860109 7718273 ~ 7734059 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other downstream 4842003 9700167 ~ 9750777 (+)

Expression


Co-expression Network