AMCG00004921 (gbg12,gng12,LOC105895117,LOC107555383,LOC107705318)


Basic Information

Item Value
gene id AMCG00004921
gene name gbg12,gng12,LOC105895117,LOC107555383,LOC107705318
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 9700167 ~ 9750777 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004921
ATGACAGACTTTAAGATGTCTTCGAAGATGCCCAGCTCAAACAACATAGCACAAGCAAGGAGGACAGTGCAGCAGCTAAGGATAGAGGCAAACATCGAGAGGATAAAGGTGTCCAAGGCGTCTGCGGATCTCATGCATTACTGTGGAGAACATGCCAAGTACGACCCCCTACTAATGGGCATCCCAACCTCCGAGAACCCCTTCAAGGACAAAAAGCCCTGCACTATATTGTAG
>TU181455
GCGGAGCGCCGACAGAGGCCGCCTCTCCGGGTCACCGACAGAGGCGAGAGtcgacagagggagggaggcggCCGAGGAAAAGGCAGTCGGAGAAAGAGAAAGCGGCTCGGAGCCCTTGCTGAGGTCCAcggtgtgtgtcagtgaaggAGAGGCGTCCAGGGACGGCGGTGTCAGGGTCCCCACTCGTCCACAGCCCCTTCCCGGCTGCGCTCAGATCCCACGTCGTCTTCAGAGGCAAAGACCATTGAGGGTTCATAACCATTGTCTGTACAAAAGGTTTTTCAACAATCCAGGCCCATTGCTGTTTACAGTGTGCTTTCAGGAAGAGAAGGTGTGTATAGTTTAAGATGTCTTCGAAGATGCCCAGCTCAAACAACATAGCACAAGCAAGGAGGACAGTGCAGCAGCTAAGGATAGAGGCAAACATCGAGAGGATAAAGGTGTCCAAGGCGTCTGCGGATCTCATGCATTACTGTGGAGAACATGCCAAGTACGACCCCCTACTAATGGGCATCCCAACCTCCGAGAACCCCTTCAAGGACAAAAAGCCCTGCACTATATTGTAGTGGACGACTGAACTCtgtgctttttaatattttttcttgtgtgtgtgtgtatatatatatatatatatatatatatatatatatttatatacacaagaaaaaatatttaaatcttattttagTAACCTCCTGAttccccccaccacacacatgcacacgcacacacgaaAATTTGTGCCCCACACCATAATTCAACTgcaagcattttttattttatttttgattgttaaaaaaacaatgctgtaatagtgtgtgtgtgtgcgaggaAACCAAGCCTGAGGATGATTAGTCATTTCAGCGCTGTATCAGTTTGTCACTCTGCTGTATCAGAGCTGTGCAGTGTCCCATTACTTCATATATTATGTGTTTAAGACCAAAGTTGCCTGAGAATAGTGCTCAGTGTAGATCTCACTACTTTATCCTATTGAAAGGGGGCAAGAAAAGTGCTTTGTAGTTGCTGGATATTAGTTGGGGAAATTATTAGATCCATGTTTTAGGTATTTGCCAACAATTCTCATTAGTTTAGAATTAATGTtctttttccaattaaaaacagtatGACTCAGTTTCTACAACCCTATATACGTCTCTGAAAATAGCTACCGTCTTTCTGAAGACAGTGACAGCCACTGTTCCTGATCCTGTGGGAAGAGGTGGTTTCGCCTGTCTGATGCTGAGGGGGCGGAGGGGCGGGTCTGGGTGAAAGGCTACGGCATAACATTAAGCTGCTCAAGAGTCCCTTTGTTACAGGCACACGTGTCTTCAGTGACATCAGTGCATTGATACAGCACCGGTGATGATGCATCAACAAAGCCAATCCTGTCTCAGGGTGGCAGACTGAGAACAGCCAGACGTGGTCTGTGGAGCTGTGCTGTTGATAAAGCAGACAATTGTTGGGGTGTCCGGTGAAGAAGAGATGCAGGGGATCCAAAAGCCTGTGCAATCGCAAGAGATTAGCCATTGTGCCCAGTTTAACTTGTTAATAGGACAACAAGCAATAAAGAATAATGTATCTTTAGAAGAAAACATTgctacaatgttttaaatatttgaatcatCTTTAATTCGCCTGTGTAATGTTGCAGTTGCTAGCATCATGCAAACAAgtgtttctaataataataataaaaaatcatcaAAATACTTTGGTTTGAAATGTAACTTCGTTATGTGCTTGTATGTAAAAGTGCATAGTTAAGAAACTCCTGCCGtaatgtttcttatgttttccACTTCCAGAATATATCTATCCATTCTGTCAAATGCTACTAATCATTCTAGTAACTCCATGTTTCATGTATGTTATCAGTTGGAGTGACACTGAACTTGGTTCAGTttggttttctgtgtgaaattgggggaaaaatgtataaacattttcCATATGTTTGAAAACCTGACTAGTAGTGGATAGTGATGGGTATGCCATAGAAGCTGAAATGCAATTGATTTCATCTCGGGATAGACCATTTCGATCCCAGTTTTTCAGTAATTCATTCCGACCCCCAACACCTGGGTGTACAATTTATAGTAAAATATGTACTGTTATATGTAAAACcaaattgtttaaatgcaaggtattaaaaacatacaatctGTATTGTACATGCTGCCTTTCACTATCTAAACGGATACTTATAAATGCCAAGCTAAGTTACACAGCCAACtactagtgtgtgtgtattgcggGCAGACAGGATGGAAAATGGCATTGCATTCCAGTTCCTGGGACTACAGCAACCCTTTAAATGAGTATGCCTTATAAGAATATGAAGGATCTTTCTATTGTCATTTTATAATGATTAATGTATATTAACTGGAGTGTAAAATGTAGAACATTTGATCTTGAGTGTGCAATTATACATCTCCAGATTGTACCAGCAatagagaaaaaagaaagcctgATTGTATTTACCACACGGTGCTCTTAGCTTGAAATGGTTTTTCAAAAGATTGTCTAGCAATAGGTAAAACTGTGTTTTTCTAACCAAATGGGGACAAAACTCTGTATTCCAATTGGTGTTCCCCTGGCAAAATGAAATGGCACGTTCCACTGTGGTTTTTGGGGATCCAAGCTTTACActttattcatatttctaaATCTGTGTGACAGCCATGCAGCTTTTGTGCCACAATACAACTGGCATGCCCAACCAAGAGACCAGCTTACCATCAATGGCCTTACAGGTTTGTGTTCAGTCTGTGATGATGTTCAGGTGTAGCGCTGTCCAGTAGTAACACCCATAATACAACCCCCTCCTTTTTGTGTCGTCTACAAATGGTCATGAAGACACTCGTATAAGACCAGGTCCAAGTTTAGGGTGTGGCAGGAGTGCAAAATCGCCAACTCTCTGCCACCAGTATTACTGAGGAGCAATCGGACTGTTTTTACCAGTTTTTGCAAACCGTGCCACTTGACTAATGAGTCTGGGAACAGGTTCAAAAGCAGCAACATTTTATTGTTGGAAGGAAAAAATTGGGATGGTCAAAACTGCAATCATGTAGCTGCATCACTGTGCCATGGCCACAGCCCTCTTCCTCTGTGTTTTCACATTACTGTTTGTCTTTGAAAGGGTGTCCTCGGAGGCCTGGTTCTTATACTGTATATGAATATTTCTGCTCTGTTCATTTTACAGTTGCTtttatattgtgatttaatcTTGTATAACTTTAGCTATACAATCAAGACTTCTCtcaaaagtattgtttttgcCAATTTAGTTCATTGGACAGAtgaatttataactttttaaaacaatcttcattttatctttttcttgttAACAAGCTGTATTTCTTTGGGTATTGTGCAtcatcatttattaaaaatcctAAGCATTTTATACCCGTTTCCAGATCTTAAAACCTCAAATCTTTATTCTACACTCAAGTACAACCAGATGTGCACTGCTAATCTATATCGTCTCTCATGAAGGTATGtgattatatatttactgtataacaGTGACATTTGTGGTTAATTTGATAACTGATTGGGGAAAAGTCATTAAGCTCTCctaaaatgtcttaattaaatTGCAAGAGGGTGAAAGTTCatgatggtttatttttatttttgatcttgtttctgtatattttcctttttgttttccttcaagaTGTTCATTAAACTAATTTTTATTGGTGTAAAATGGATGTGTTACCTACAAACACTGAAGCAAAATGTATGTGGAAAAGTAAAGGAAGGTAGATTGTATCAAA

Function

symbol description
gng12 Enables PDZ domain binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Located in extracellular exosome.

NR:

description
PREDICTED: guanine nucleotide-binding protein GI/GS/GO subunit gamma-12 isoform X1

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0004871 obsolete signal transducer activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004921 False 234 mRNA 0.49 3 9746540 9747555
TU181455 True 3788 lncRNA 0.40 5 9700167 9750777

Neighbor

gene id symbol gene type direction distance location
AMCG00004929 diras2,LOC107560410,LOC107736992,LOC107670053,LOC107702570 coding upstream 11376 9685517 ~ 9688791 (+)
AMCG00004924 wls coding upstream 16044 9663323 ~ 9684123 (+)
AMCG00004923 dr1,nc2b coding upstream 42164 9653584 ~ 9658003 (+)
AMCG00004928 LOC103368644,LOC107091536,LOC106920129,LOC103463988,LOC103139842 coding upstream 49104 9647466 ~ 9651063 (+)
AMCG00004927 NA coding upstream 53755 9632837 ~ 9646412 (+)
AMCG00004930 NA coding downstream 12742 9763519 ~ 9779724 (+)
AMCG00004932 NA coding downstream 97807 9848584 ~ 9888182 (+)
AMCG00004936 NA coding downstream 187644 9938421 ~ 9941239 (+)
AMCG00004934 NA coding downstream 299281 10050058 ~ 10116505 (+)
AMCG00004945 ptprf coding downstream 854870 10605647 ~ 10607897 (+)
G144237 NA non-coding upstream 142692 9554100 ~ 9557475 (+)
G144227 NA non-coding upstream 199189 9494496 ~ 9500978 (+)
G144218 NA non-coding upstream 233554 9464141 ~ 9466613 (+)
G144210 NA non-coding upstream 251634 9447589 ~ 9448533 (+)
G144195 NA non-coding upstream 256273 9443656 ~ 9443894 (+)
G144315 glul,gs01,LOC107083392,LOC107732203,LOC106584177,LOC108438877,LOC104941255,LOC108272186,LOC108437688,LOC105011759,LOC107733907,LOC106560331 non-coding downstream 92652 9843429 ~ 9847756 (+)
G144512 NA non-coding downstream 1245605 10996382 ~ 10997606 (+)
G144534 NA non-coding downstream 1384980 11135757 ~ 11139343 (+)
G144549 NA non-coding downstream 1447536 11198313 ~ 11199835 (+)
G144581 btf3l4,bt3l4,LOC107562065,LOC107655993,LOC104965512,LOC103026176 non-coding downstream 1493825 11244602 ~ 11247808 (+)
AMCG00004870 rpf1,LOC107745333 other upstream 1966108 7718273 ~ 7734059 (+)
AMCG00004868 samd13 other upstream 2007806 7672816 ~ 7692361 (+)
AMCG00004864 NA other upstream 2076097 7608901 ~ 7624070 (+)
G143626 NA other upstream 4276046 5423703 ~ 5424121 (+)
G143471 LOC107575789 other upstream 5328078 4371709 ~ 4372089 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other downstream 197633 9948410 ~ 10015424 (+)
G144677 NA other downstream 1911904 11662681 ~ 11663368 (+)
G144940 NA other downstream 3029803 12780580 ~ 12781170 (+)
AMCG00005060 LOC106599426 other downstream 4404378 14155155 ~ 14188329 (+)
AMCG00005105 LOC102220226,LOC108442892 other downstream 5628822 15379599 ~ 15384811 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G278796 NA non-coding NW_019172384.1 APWO02001982.1 45365 ~ 52429 (-)