RNA id: TU181455


Basic Information

Item Value
RNA id TU181455
length 3788
lncRNA type sense_over
GC content 0.40
exon number 5
gene id AMCG00004921
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 9700167 ~ 9750777 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGGAGCGCCGACAGAGGCCGCCTCTCCGGGTCACCGACAGAGGCGAGAGtcgacagagggagggaggcggCCGAGGAAAAGGCAGTCGGAGAAAGAGAAAGCGGCTCGGAGCCCTTGCTGAGGTCCAcggtgtgtgtcagtgaaggAGAGGCGTCCAGGGACGGCGGTGTCAGGGTCCCCACTCGTCCACAGCCCCTTCCCGGCTGCGCTCAGATCCCACGTCGTCTTCAGAGGCAAAGACCATTGAGGGTTCATAACCATTGTCTGTACAAAAGGTTTTTCAACAATCCAGGCCCATTGCTGTTTACAGTGTGCTTTCAGGAAGAGAAGGTGTGTATAGTTTAAGATGTCTTCGAAGATGCCCAGCTCAAACAACATAGCACAAGCAAGGAGGACAGTGCAGCAGCTAAGGATAGAGGCAAACATCGAGAGGATAAAGGTGTCCAAGGCGTCTGCGGATCTCATGCATTACTGTGGAGAACATGCCAAGTACGACCCCCTACTAATGGGCATCCCAACCTCCGAGAACCCCTTCAAGGACAAAAAGCCCTGCACTATATTGTAGTGGACGACTGAACTCtgtgctttttaatattttttcttgtgtgtgtgtgtatatatatatatatatatatatatatatatatatttatatacacaagaaaaaatatttaaatcttattttagTAACCTCCTGAttccccccaccacacacatgcacacgcacacacgaaAATTTGTGCCCCACACCATAATTCAACTgcaagcattttttattttatttttgattgttaaaaaaacaatgctgtaatagtgtgtgtgtgtgcgaggaAACCAAGCCTGAGGATGATTAGTCATTTCAGCGCTGTATCAGTTTGTCACTCTGCTGTATCAGAGCTGTGCAGTGTCCCATTACTTCATATATTATGTGTTTAAGACCAAAGTTGCCTGAGAATAGTGCTCAGTGTAGATCTCACTACTTTATCCTATTGAAAGGGGGCAAGAAAAGTGCTTTGTAGTTGCTGGATATTAGTTGGGGAAATTATTAGATCCATGTTTTAGGTATTTGCCAACAATTCTCATTAGTTTAGAATTAATGTtctttttccaattaaaaacagtatGACTCAGTTTCTACAACCCTATATACGTCTCTGAAAATAGCTACCGTCTTTCTGAAGACAGTGACAGCCACTGTTCCTGATCCTGTGGGAAGAGGTGGTTTCGCCTGTCTGATGCTGAGGGGGCGGAGGGGCGGGTCTGGGTGAAAGGCTACGGCATAACATTAAGCTGCTCAAGAGTCCCTTTGTTACAGGCACACGTGTCTTCAGTGACATCAGTGCATTGATACAGCACCGGTGATGATGCATCAACAAAGCCAATCCTGTCTCAGGGTGGCAGACTGAGAACAGCCAGACGTGGTCTGTGGAGCTGTGCTGTTGATAAAGCAGACAATTGTTGGGGTGTCCGGTGAAGAAGAGATGCAGGGGATCCAAAAGCCTGTGCAATCGCAAGAGATTAGCCATTGTGCCCAGTTTAACTTGTTAATAGGACAACAAGCAATAAAGAATAATGTATCTTTAGAAGAAAACATTgctacaatgttttaaatatttgaatcatCTTTAATTCGCCTGTGTAATGTTGCAGTTGCTAGCATCATGCAAACAAgtgtttctaataataataataaaaaatcatcaAAATACTTTGGTTTGAAATGTAACTTCGTTATGTGCTTGTATGTAAAAGTGCATAGTTAAGAAACTCCTGCCGtaatgtttcttatgttttccACTTCCAGAATATATCTATCCATTCTGTCAAATGCTACTAATCATTCTAGTAACTCCATGTTTCATGTATGTTATCAGTTGGAGTGACACTGAACTTGGTTCAGTttggttttctgtgtgaaattgggggaaaaatgtataaacattttcCATATGTTTGAAAACCTGACTAGTAGTGGATAGTGATGGGTATGCCATAGAAGCTGAAATGCAATTGATTTCATCTCGGGATAGACCATTTCGATCCCAGTTTTTCAGTAATTCATTCCGACCCCCAACACCTGGGTGTACAATTTATAGTAAAATATGTACTGTTATATGTAAAACcaaattgtttaaatgcaaggtattaaaaacatacaatctGTATTGTACATGCTGCCTTTCACTATCTAAACGGATACTTATAAATGCCAAGCTAAGTTACACAGCCAACtactagtgtgtgtgtattgcggGCAGACAGGATGGAAAATGGCATTGCATTCCAGTTCCTGGGACTACAGCAACCCTTTAAATGAGTATGCCTTATAAGAATATGAAGGATCTTTCTATTGTCATTTTATAATGATTAATGTATATTAACTGGAGTGTAAAATGTAGAACATTTGATCTTGAGTGTGCAATTATACATCTCCAGATTGTACCAGCAatagagaaaaaagaaagcctgATTGTATTTACCACACGGTGCTCTTAGCTTGAAATGGTTTTTCAAAAGATTGTCTAGCAATAGGTAAAACTGTGTTTTTCTAACCAAATGGGGACAAAACTCTGTATTCCAATTGGTGTTCCCCTGGCAAAATGAAATGGCACGTTCCACTGTGGTTTTTGGGGATCCAAGCTTTACActttattcatatttctaaATCTGTGTGACAGCCATGCAGCTTTTGTGCCACAATACAACTGGCATGCCCAACCAAGAGACCAGCTTACCATCAATGGCCTTACAGGTTTGTGTTCAGTCTGTGATGATGTTCAGGTGTAGCGCTGTCCAGTAGTAACACCCATAATACAACCCCCTCCTTTTTGTGTCGTCTACAAATGGTCATGAAGACACTCGTATAAGACCAGGTCCAAGTTTAGGGTGTGGCAGGAGTGCAAAATCGCCAACTCTCTGCCACCAGTATTACTGAGGAGCAATCGGACTGTTTTTACCAGTTTTTGCAAACCGTGCCACTTGACTAATGAGTCTGGGAACAGGTTCAAAAGCAGCAACATTTTATTGTTGGAAGGAAAAAATTGGGATGGTCAAAACTGCAATCATGTAGCTGCATCACTGTGCCATGGCCACAGCCCTCTTCCTCTGTGTTTTCACATTACTGTTTGTCTTTGAAAGGGTGTCCTCGGAGGCCTGGTTCTTATACTGTATATGAATATTTCTGCTCTGTTCATTTTACAGTTGCTtttatattgtgatttaatcTTGTATAACTTTAGCTATACAATCAAGACTTCTCtcaaaagtattgtttttgcCAATTTAGTTCATTGGACAGAtgaatttataactttttaaaacaatcttcattttatctttttcttgttAACAAGCTGTATTTCTTTGGGTATTGTGCAtcatcatttattaaaaatcctAAGCATTTTATACCCGTTTCCAGATCTTAAAACCTCAAATCTTTATTCTACACTCAAGTACAACCAGATGTGCACTGCTAATCTATATCGTCTCTCATGAAGGTATGtgattatatatttactgtataacaGTGACATTTGTGGTTAATTTGATAACTGATTGGGGAAAAGTCATTAAGCTCTCctaaaatgtcttaattaaatTGCAAGAGGGTGAAAGTTCatgatggtttatttttatttttgatcttgtttctgtatattttcctttttgttttccttcaagaTGTTCATTAAACTAATTTTTATTGGTGTAAAATGGATGTGTTACCTACAAACACTGAAGCAAAATGTATGTGGAAAAGTAAAGGAAGGTAGATTGTATCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181382 lncRNA upstream 142692 9554100 ~ 9557475 (+) True G144237
TU181368 lncRNA upstream 199189 9494496 ~ 9500978 (+) True G144227
TU181359 lncRNA upstream 233554 9464141 ~ 9466613 (+) True G144218
TU181351 lncRNA upstream 251634 9447589 ~ 9448533 (+) True G144210
TU181336 lncRNA upstream 256273 9443656 ~ 9443894 (+) True G144195
TU181492 lncRNA downstream 92652 9843429 ~ 9847756 (+) True G144315
TU181493 lncRNA downstream 92652 9843429 ~ 9847756 (+) False G144315
TU181495 lncRNA downstream 92652 9843429 ~ 9847756 (+) False G144315
TU181537 lncRNA downstream 197633 9948410 ~ 10015424 (+) False AMCG00004935
TU181539 lncRNA downstream 251621 10002398 ~ 10015424 (+) True AMCG00004935
AMCG00004929 mRNA upstream 11376 9685517 ~ 9688791 (+) True AMCG00004929
AMCG00004924 mRNA upstream 16044 9663323 ~ 9684123 (+) True AMCG00004924
AMCG00004923 mRNA upstream 42164 9653584 ~ 9658003 (+) True AMCG00004923
AMCG00004928 mRNA upstream 49104 9647466 ~ 9651063 (+) True AMCG00004928
AMCG00004927 mRNA upstream 53755 9632837 ~ 9646412 (+) True AMCG00004927
AMCG00004930 mRNA downstream 12742 9763519 ~ 9779724 (+) True AMCG00004930
AMCG00004932 mRNA downstream 97807 9848584 ~ 9888182 (+) True AMCG00004932
AMCG00004936 mRNA downstream 187644 9938421 ~ 9941239 (+) True AMCG00004936
AMCG00004935 mRNA downstream 247153 9997930 ~ 10011023 (+) False AMCG00004935
AMCG00004934 mRNA downstream 299281 10050058 ~ 10116505 (+) True AMCG00004934
TU180912 other upstream 1969167 7729389 ~ 7731000 (+) False AMCG00004870
TU180621 other upstream 4276046 5423703 ~ 5424121 (+) True G143626
TU180426 other upstream 5328078 4371709 ~ 4372089 (+) True G143471
TU180351 other upstream 5590512 4109022 ~ 4109655 (+) True G143404
TU180311 other upstream 5750330 3949426 ~ 3949837 (+) True G143366
TU181952 other downstream 1911904 11662681 ~ 11663368 (+) True G144677
TU182286 other downstream 3029803 12780580 ~ 12781170 (+) True G144940
TU183002 other downstream 5633466 15384243 ~ 15384612 (+) False AMCG00005105
TU183561 other downstream 8014480 17765257 ~ 17771525 (+) True G145932
TU184056 other downstream 9828796 19579573 ~ 19579807 (+) True G146305

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00031938 False 1765 mRNA 0.37 3 NC_007113.7 10287133 ~ 10338813 (-)
grasscarp (Ctenopharyngodon idella) CI01000004_03426800_03430289.mRNA False 1677 mRNA 0.37 2 CI01000004 3425462 ~ 3430421 (+)
striped catfish (Pangasianodon hypophthalmus) TU382490 False 732 lncRNA 0.47 3 NC_047615.1 19204678 ~ 19218238 (+)
mexican tetra (Astyanax mexicanus) TU382490 True 942 lncRNA 0.44 2 NW_019172384.1 45365 ~ 52429 (-)