RNA id: TU180621



Basic Information


Item Value
RNA id TU180621
length 419
RNA type TUCP
GC content 0.51
exon number 1
gene id G143626
representative True

Chromosome Information


Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 5423703 ~ 5424121 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


atacaccgatcagccataacattatgaccactgacaggtgaagtgaataacactgacaaTCTCgctatcatggcacctgtcagtgggtgtgatatattaggcagcaagtgaacattttgtcctcaaagttgatgtgttagaagcaggaaaaatgggcaagcgtaaggatctgagcgacctTAACAAGAGCCaaactgtgatggctagacgactgggtcagagcatctccaaaactgcagctcttgtggggtgttcccggtctgcagtggtcagtacctatcaaaagtggtccaaggaaggaaaagcggtgaactggcgacagggtcatgggcggccaaggctcattgatgcacgtggggagcgaaggccggcccgtgtggtccgatccaacagacgagctactgtagctcaaattgctg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU180496 lncRNA upstream 565539 4852163 ~ 4858164 (+) True G143526
TU180401 lncRNA upstream 1171614 4251709 ~ 4252089 (+) True G143447
TU180391 lncRNA upstream 1184843 4218037 ~ 4238860 (+) True G143440
TU180361 lncRNA upstream 1289794 4133275 ~ 4133909 (+) True G143414
TU180364 lncRNA upstream 1289794 4133455 ~ 4133909 (+) False G143414
TU180625 lncRNA downstream 37371 5461492 ~ 5461854 (+) True G143630
TU180738 lncRNA downstream 1076115 6500236 ~ 6500721 (+) True G143721
TU180800 lncRNA downstream 1210937 6635058 ~ 6635410 (+) True G143772
TU180866 lncRNA downstream 2184780 7608901 ~ 7609824 (+) False AMCG00004864
TU180890 lncRNA downstream 2248695 7672816 ~ 7692264 (+) False AMCG00004868
AMCG00004839 mRNA upstream 56815 5362128 ~ 5366888 (+) True AMCG00004839
AMCG00004834 mRNA upstream 358290 5058465 ~ 5065413 (+) True AMCG00004834
AMCG00004833 mRNA upstream 365614 5003320 ~ 5058089 (+) True AMCG00004833
AMCG00004827 mRNA upstream 823382 4591908 ~ 4600321 (+) True AMCG00004827
AMCG00004825 mRNA upstream 1105369 4310768 ~ 4318334 (+) True AMCG00004825
AMCG00004846 mRNA downstream 207035 5631156 ~ 5640713 (+) True AMCG00004846
AMCG00004847 mRNA downstream 233623 5657744 ~ 5707951 (+) True AMCG00004847
AMCG00004845 mRNA downstream 300466 5724587 ~ 5726210 (+) True AMCG00004845
AMCG00004851 mRNA downstream 306849 5730970 ~ 5740518 (+) True AMCG00004851
AMCG00004849 mRNA downstream 319810 5743931 ~ 5744335 (+) True AMCG00004849
TU180426 other upstream 1051614 4371709 ~ 4372089 (+) True G143471
TU180351 other upstream 1314048 4109022 ~ 4109655 (+) True G143404
TU180311 other upstream 1473866 3949426 ~ 3949837 (+) True G143366
TU180140 other upstream 2028545 3377815 ~ 3395158 (+) True AMCG00004793
TU180082 other upstream 2299221 3123081 ~ 3124482 (+) True AMCG00004788
TU180912 other downstream 2305268 7729389 ~ 7731000 (+) False AMCG00004870
TU181952 other downstream 6238560 11662681 ~ 11663368 (+) True G144677
TU182286 other downstream 7356459 12780580 ~ 12781170 (+) True G144940
TU183002 other downstream 9960122 15384243 ~ 15384612 (+) False AMCG00005105
TU183561 other downstream 12341136 17765257 ~ 17771525 (+) True G145932

Expression Profile