RNA id: AMCG00004845



Basic Information


Item Value
RNA id AMCG00004845
length 1206
RNA type mRNA
GC content 0.49
exon number 2
gene id AMCG00004845
representative True

Chromosome Information


Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 5724587 ~ 5726210 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GCTTAGAAGAACAACTAGTTTTTCACCAGACAAATTCGAATTTAGAAATGGACAAGAAACATTTTTCGGTCCGTGATAGACAGCGACTTCAGGAAAGTCATCAACTGTCAGAGCCGACCTTCTTCACTAAGCCAGAGACTACAGACCTCCCCAGAGTGGTGCTAGGAGACAGTTTCCCGCATTTTCACTGCTCTGACCCTCTTGTCGTCCTGAAGGCCTCCTCCCCTTGCGTCACCTTTCATGGCCCCCCGGAGTCGTTCATGAATTATTCCTATGCCCCTTCTGTTCCTAGCTTCACCCCACCTAGTTACAGGCCTGCCCAGGCTGGCAGCTGGACCCAGCCTTCTTCATTTCCATACCATAAATTCATGCAGCCTCCCAGCCTCCAGGACTGCTCAGTGGACAGGAATGATCAATGGGAGCCTATAATGACGCACAGCTCCCCACTACACAACCTGCTTCTACTGTCCCTAGAAGACACTGTTGTTCCTCGCTCCACCCCACCTAAAGTCAGCCCTGCCCCAGCTGGCAGCGGGACCCAGCCTTCTTCATTTGCATATCAGAAATACATGCAGCCTCTCAGCCTCCAGGACTGCTCAACCAAGCATGATCAATGGGAGCCTATATTGACGTGCAGCTCCCCACTTTACAAGCTGCTAATGTCCCTAGAAGATGAAGCCCCCTGTGAGGAAACCCATCCTGTTCTGCCCCAGAAGGCTAAGCCTGCTCTCCAAGAAAATGGTTCTACTGAACAAACCTTGAATGCACCAGTTGAGGACGACCCACCCTGTCATGAGCACAAAACCTCACCAGCACTGGATGAAGATTCAGTTTCTGGCAACCAAACACCAGCTGGCCTAAATCAATACTGGGCCAGTGGTAACCACTCACAAGATTCAGTGGACGAGCCTGCCTATTGTCAACAAACCCCAAGTGAACAAACCGAGGACCCTGTGTTAGGTGACAAACCACCAACTGCAGCGATTGAAGACCTGGCTTCTGCTCACAAAACTGTTGTTGTCGTAGGACAACAGAGGAGGCATTGAAAATGGGAGAAGTCTCAACTGCATACGGACAAAATCATCCAGTGACTTCAATGTCCAAGACTAAAGGGCAATCAATTCCTCTCAAAGCTTCATTTTATACCCtagattgtgttttgtgtgtctacAGTTCCttgcaataatacatttaaaaattataaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU180625 lncRNA upstream 262733 5461492 ~ 5461854 (+) True G143630
TU180496 lncRNA upstream 866423 4852163 ~ 4858164 (+) True G143526
TU180401 lncRNA upstream 1472498 4251709 ~ 4252089 (+) True G143447
TU180391 lncRNA upstream 1485727 4218037 ~ 4238860 (+) True G143440
TU180364 lncRNA upstream 1590678 4133455 ~ 4133909 (+) False G143414
TU180738 lncRNA downstream 774026 6500236 ~ 6500721 (+) True G143721
TU180800 lncRNA downstream 908848 6635058 ~ 6635410 (+) True G143772
TU180866 lncRNA downstream 1882691 7608901 ~ 7609824 (+) False AMCG00004864
TU180890 lncRNA downstream 1946606 7672816 ~ 7692264 (+) False AMCG00004868
TU181008 lncRNA downstream 2147403 7873613 ~ 7874434 (+) True G143923
AMCG00004847 mRNA upstream 16636 5657744 ~ 5707951 (+) True AMCG00004847
AMCG00004846 mRNA upstream 83874 5631156 ~ 5640713 (+) True AMCG00004846
AMCG00004839 mRNA upstream 357699 5362128 ~ 5366888 (+) True AMCG00004839
AMCG00004834 mRNA upstream 659174 5058465 ~ 5065413 (+) True AMCG00004834
AMCG00004833 mRNA upstream 666498 5003320 ~ 5058089 (+) True AMCG00004833
AMCG00004851 mRNA downstream 4760 5730970 ~ 5740518 (+) True AMCG00004851
AMCG00004849 mRNA downstream 17721 5743931 ~ 5744335 (+) True AMCG00004849
AMCG00004850 mRNA downstream 54764 5780974 ~ 5796393 (+) True AMCG00004850
AMCG00004852 mRNA downstream 74203 5800413 ~ 5816834 (+) True AMCG00004852
AMCG00004856 mRNA downstream 590691 6316901 ~ 6330455 (+) True AMCG00004856
TU180621 other upstream 300466 5423703 ~ 5424121 (+) True G143626
TU180426 other upstream 1352498 4371709 ~ 4372089 (+) True G143471
TU180351 other upstream 1614932 4109022 ~ 4109655 (+) True G143404
TU180311 other upstream 1774750 3949426 ~ 3949837 (+) True G143366
TU180140 other upstream 2329429 3377815 ~ 3395158 (+) True AMCG00004793
TU180912 other downstream 2003179 7729389 ~ 7731000 (+) False AMCG00004870
TU181952 other downstream 5936471 11662681 ~ 11663368 (+) True G144677
TU182286 other downstream 7054370 12780580 ~ 12781170 (+) True G144940
TU183002 other downstream 9658033 15384243 ~ 15384612 (+) False AMCG00005105
TU183561 other downstream 12039047 17765257 ~ 17771525 (+) True G145932

Expression Profile