RNA id: TU180391


Basic Information

Item Value
RNA id TU180391
length 1282
lncRNA type sense_over
GC content 0.44
exon number 2
gene id G143440
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 4218037 ~ 4238860 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gccGGGCGGCCGCGGAGGATTGTTGTGCGACGCGGGGGGTCGTGACGAGGCTGAGTCGGCGCTTCCAGATCTTGGCTCGGTGAAGTGAAACGGACGTGATGTATGACAACAGCCTTCAGGAAGTGATGAAAGGAGAGTGAGCCCTTAGAAGTGAGTCCCGAGGAGGCTTCCTGCAGTGAATTGTTATACTTTGGTTCTTACAGTGTCAAAGTGATGTCttgtttaaaaatcataatCTCCTCCAAATTACCCTCTATGGGGTGATCAGTAACCTTTCCAGTTAAAATGACTCCTGTTGCAAACCAAAATACACTCAATGCAGCATATTgaaactggaaacatacaccTCAAGGGGGCATAATTGATGTCCAGAATAGTTTAATGTAGTGCCCTCACTATTAACAGAACGAGACATTATAAAACAGTAGGCTGGAGATACTAGTCCTACAGGTTTTTAAGACCCAAAGCTGGTTCGCTTatgtaactgagagctcagttggtATGAAAGCCAGAAGACCTTGTTACTCTCCAAGACCAGAGGCTGATGACCCCTGATTTTAAAGGATGCTTGCTTTCTTCTCAAGCTGGGATCTCAAAGATATGGACAGCTTGTGAAAACATGCTtgaaacacacactcaaaagTTAATCTGAAGAAAGCCATGGATATcgaaaaaagaacaaaggggGCTCGTGAGAAAAATGATTTAAGGTTGTAATTGGTAAGGgtgccattaaaaaaatatttttggaagatgAGCACACAGGCACAGACTGAGCAGTCCACTTATTTGCACAACTTCTCATATGTTCCAAACTACTGGAGCTCCCTGCTAACAAATAAGCAGTgaaaaggaacaaacaaacTCCATGCTGTGTGAGCAAGCCTGTGCCGAGAGTGGGCCGATGCAGCTGTGAGCTGGCTGCTCAATTCCCAGGTGCCTGCCTTCCGATGGATTGACTCCCGAGAAGAGGAGAAAGCAGTTATGAAACCATTTCCTGGCCATCCGTTCTTTACGCAGTGAGAATGCAATATGTTGTAGTGTTTAACTGAAGGTGGCCAATGCAGGCAGGGGAATAGTTAttattgtaagtcaccctggataagggtgtctgctaagaaatcgagtaataataataaataataattagttgtTGTTGCTTTCCTTTTGTTATTTGGAGTAAAAGAATCTGGTAGGCTGCTGTAGAAATGTCTAATGCTTCAGTCATGCTGTGAGCTTTAAGCAAAGGCAGACTATTGGTTGGGAAGTGTACAGGGGCTCC

Function

GO: NA

KEGG:

id description
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180361 lncRNA upstream 84128 4133275 ~ 4133909 (+) True G143414
TU180364 lncRNA upstream 84128 4133455 ~ 4133909 (+) False G143414
TU180352 lncRNA upstream 104549 4113261 ~ 4113488 (+) True G143405
TU180350 lncRNA upstream 114181 4102262 ~ 4103856 (+) True G143403
TU180325 lncRNA upstream 128764 4084099 ~ 4089273 (+) True G143380
TU180401 lncRNA downstream 12849 4251709 ~ 4252089 (+) True G143447
TU180496 lncRNA downstream 613303 4852163 ~ 4858164 (+) True G143526
TU180625 lncRNA downstream 1222632 5461492 ~ 5461854 (+) True G143630
TU180738 lncRNA downstream 2261376 6500236 ~ 6500721 (+) True G143721
TU180800 lncRNA downstream 2396198 6635058 ~ 6635410 (+) True G143772
AMCG00004822 mRNA upstream 26840 4163753 ~ 4191197 (+) True AMCG00004822
AMCG00004816 mRNA upstream 85922 4128226 ~ 4132115 (+) True AMCG00004816
AMCG00004817 mRNA upstream 117585 4090612 ~ 4100452 (+) True AMCG00004817
AMCG00004818 mRNA upstream 138448 4053649 ~ 4079589 (+) True AMCG00004818
AMCG00004814 mRNA upstream 193652 4021807 ~ 4024385 (+) True AMCG00004814
AMCG00004826 mRNA downstream 50949 4289809 ~ 4301784 (+) True AMCG00004826
AMCG00004825 mRNA downstream 71908 4310768 ~ 4318334 (+) True AMCG00004825
AMCG00004827 mRNA downstream 353048 4591908 ~ 4600321 (+) True AMCG00004827
AMCG00004833 mRNA downstream 764460 5003320 ~ 5058089 (+) True AMCG00004833
AMCG00004834 mRNA downstream 819605 5058465 ~ 5065413 (+) True AMCG00004834
TU180351 other upstream 108382 4109022 ~ 4109655 (+) True G143404
TU180311 other upstream 268200 3949426 ~ 3949837 (+) True G143366
TU180140 other upstream 822879 3377815 ~ 3395158 (+) True AMCG00004793
TU180082 other upstream 1093555 3123081 ~ 3124482 (+) True AMCG00004788
TU180426 other downstream 132849 4371709 ~ 4372089 (+) True G143471
TU180621 other downstream 1184843 5423703 ~ 5424121 (+) True G143626
TU180912 other downstream 3490529 7729389 ~ 7731000 (+) False AMCG00004870
TU181952 other downstream 7423821 11662681 ~ 11663368 (+) True G144677
TU182286 other downstream 8541720 12780580 ~ 12781170 (+) True G144940

Expression Profile