AMCG00004814 (s1pr1,LOC106613588,LOC106573949)


Basic Information

Item Value
gene id AMCG00004814
gene name s1pr1,LOC106613588,LOC106573949
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 4021807 ~ 4024385 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004814
ATGCGTGGAGAACATAGGTCGGCTCTGGGGCGCGCGCAGGGGGGGGCGGGTCCACGGCTCGAGCTCAGTCCTCGAACGGTCCGCGCAGAGCTCAGACTGACGGCGCGCGGAGCGGAGAGTGCGCAGATCGCGGGAGCTGAGCGCCGGCGGAGAGCCATGGAGCGGACCACAGCGGGCCCCATCAAAACCATGTACGATTCCATGCACTCAGACCTAATAGCGAGACATTACAATTTCACTGGCAAATTTCGCAAAGTCGAGCAGGACTCTGGCCTCAAAGCCGACTCTGTGGTTTTCATCATCGTGTGCTGCTTCATCATCCTGGAAAATATAATGGTTCTACTCACGATATGGAGGACGAAAAAGTTCCACAAGCCGATGTATTACTTTATTGGGAATTTGGCGTTGTCAGACTTGCTGGCGGGAGTGGTTTACACCTGCAACATTCTGCTGTCTGGAGCTAACACTTACAAACTGACGCCCATTCAGTGGTTCTTCAGGGAGGGGAGTATGTTCGTGGCCCTAGCCGCCTCGGTCTTCAGCCTGCTGGCCATCGCCATCGAGAGGCACCTGACCATGCTTAAGATGAAACTGCACAATGGCAGCAACACCTGCCGTGTGTTCCTGCTCATCAGCACTTGTTGGTTTATCTCGGCCATTTTAGGGGGGCTGCCGATCATGGGCTGGAATTGCATCGGCAGCATGAGCAGCTGCTCCACTGTATTGCCGCTGTACCACAAGACCTACATCTTGTTCTGCACCACGGTCTTCAGCGTCATCCTCATGGCCATCGTCATCCTCTACGCCCGCATCTACTCGCTGGTGAGGACAAGGAGCCGCAAACTGGTGTTCAGGAAGTACTCAAACAGCCGGAGCAGCAAGAGCTCGGAGAAGTCCCTGGCGCTGCTGAAGACCGTCATCATCGTCCTCAGCTGCTTCATCGCATGCTGGGCACCGCTCTTCATCCTCCTGCTGCTGGACGTGGCCTGCAAGACCGGGGAGTGCGCGATCCTCTACAAGGCCGAGTGGTTTCTGGCGCTGGCCGTGCTCAATTCGGCCATGAACCCACTCATCTACACCCTCACCAGCAACGAGATGCGCCGGGCCTTTCTCAAGATGCTCCTGTGCAGCGTGTGCAGTGGCCAGCCCAGTGGCAAGTTCAAGCGGCCCATCATCGGCGGGATCGAGTTCAGCCGCAGCAAGTCAGACAACTCATCCCACCCCAACAAGGAGGAGGCCGAGTACTCCCCAGAGACTGTCGTTTCCTCTGGGAATATTACCTCCTCATCTTAG

Function

symbol description
s1pr1 Enables lysophosphatidic acid receptor activity. Involved in G protein-coupled receptor signaling pathway. Acts upstream of or within several processes, including ameboidal-type cell migration; circulatory system development; and negative regulation of angiogenesis. Predicted to be intrinsic component of plasma membrane. Predicted to be active in cytoplasm and plasma membrane. Is expressed in several structures, including cardiovascular system; fin bud; nervous system; neural tube; and pleuroperitoneal region. Orthologous to human S1PR1 (sphingosine-1-phosphate receptor 1).

NR:

description
PREDICTED: sphingosine 1-phosphate receptor 1

GO:

id name namespace
GO:0003376 sphingosine-1-phosphate receptor signaling pathway biological_process
GO:0030335 positive regulation of cell migration biological_process
GO:0001944 vasculature development biological_process
GO:0008078 mesodermal cell migration biological_process
GO:0031226 intrinsic component of plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038036 sphingosine-1-phosphate receptor activity molecular_function

KEGG:

id description
K04288 S1PR1, EDG1, CD363; sphingosine 1-phosphate receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004814 True 1293 mRNA 0.57 2 4021807 4024385

Neighbor

gene id symbol gene type direction distance location
AMCG00004815 NA coding upstream 269 4004368 ~ 4021538 (+)
AMCG00004813 NA coding upstream 24561 3960595 ~ 3997246 (+)
AMCG00004810 slc30a7,LOC107653547,LOC107592711 coding upstream 123198 3897939 ~ 3898609 (+)
AMCG00004809 slc30a7,LOC107653547,LOC107592711 coding upstream 141971 3864558 ~ 3879836 (+)
AMCG00004807 NA coding upstream 180535 3829041 ~ 3841272 (+)
AMCG00004818 NA coding downstream 29264 4053649 ~ 4079589 (+)
AMCG00004817 NA coding downstream 66227 4090612 ~ 4100452 (+)
AMCG00004816 NA coding downstream 103841 4128226 ~ 4132115 (+)
AMCG00004822 NA coding downstream 139368 4163753 ~ 4191197 (+)
AMCG00004821 NA coding downstream 200522 4224907 ~ 4225812 (+)
G143356 NA non-coding upstream 114886 3906593 ~ 3906921 (+)
G143302 NA non-coding upstream 331614 3689158 ~ 3690193 (+)
G143237 NA non-coding upstream 433702 3581082 ~ 3588105 (+)
G143218 NA non-coding upstream 644536 3377069 ~ 3377271 (+)
G143195 NA non-coding upstream 645783 3310907 ~ 3376024 (+)
G143380 NA non-coding downstream 59714 4084099 ~ 4089273 (+)
G143403 NA non-coding downstream 77877 4102262 ~ 4103856 (+)
G143405 NA non-coding downstream 88876 4113261 ~ 4113488 (+)
G143414 NA non-coding downstream 108890 4133275 ~ 4133909 (+)
G143440 NA non-coding downstream 193652 4218037 ~ 4238860 (+)
G143366 NA other upstream 71970 3949426 ~ 3949837 (+)
AMCG00004793 NA other upstream 626649 3377815 ~ 3395158 (+)
AMCG00004788 NA other upstream 861598 3123081 ~ 3160209 (+)
G143075 elavl4,LOC106613894,LOC103028496 other upstream 1462727 2440541 ~ 2559080 (+)
AMCG00004749 NA other upstream 3898842 116491 ~ 122965 (+)
G143404 LOC107757485,LOC107715094,LOC107588062,LOC107653629,LOC106613586,LOC107592717,LOC107669813 other downstream 84637 4109022 ~ 4109655 (+)
G143471 LOC107575789 other downstream 347324 4371709 ~ 4372089 (+)
G143626 NA other downstream 1399318 5423703 ~ 5424121 (+)
AMCG00004864 NA other downstream 3584516 7608901 ~ 7624070 (+)
AMCG00004868 samd13 other downstream 3648431 7672816 ~ 7692361 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021034 s1pr1 coding NC_007133.7 CM002906.2 16038495 ~ 16042243 (-)
grasscarp (Ctenopharyngodon idella) CI01000030_01186486_01187574 S1PR1 coding CI01000030 null 1185941 ~ 1187995 (-)
mexican tetra (Astyanax mexicanus) G42430 s1pr1,LOC107715096,LOC107592715,LOC107669844 non-coding NC_035901.1 CM008304.1 13981970 ~ 13985061 (-)