AMCG00004827 (tm2d1,LOC107669801,LOC107715116,LOC107653653,LOC107731529)


Basic Information

Item Value
gene id AMCG00004827
gene name tm2d1,LOC107669801,LOC107715116,LOC107653653,LOC107731529
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 4591908 ~ 4600321 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004827
ATGGCTGCCTCCAGGAAGCGAAAGATCTGTTTACCatcgattttttttattttattttattttatttcttacaaaTGGGAAACGGTATCCACCGATGGAGTGGAATACTGCGATAAGCTTCGACTTGGACAATATCCTTTGGTATGTGAAGGCCCTAAAATAAACGATGAAACCCAAGAACCAGAGAACTGCACGGATTTAGTTGCCTATGTTGATTGCAAGCCTGCTCCAAGTATTTATTGCCGCTTCTCCAACGGGACCGAATTCAAATTCTCCGGTGAAGAAGTCGGATTTCAGAAACCGATCCCCTGCCGAAATGTaagtgGTTATTCATACAAAGTTGCCGTAGCCCTTTCCCTCTTCCTGGGCTGGCTGGGAGCTGACCGCTTCTATTTAGGCTACCCAGCTTTAGGTTTGCTGAAGTTCTGCACGGTTGGCTTTTGTGGAATTGGGAGCCTTATTGATTTCATGTTAATCTCAATGCAG

Function

symbol description
tm2d1 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TM2D1 (TM2 domain containing 1).

NR:

description
PREDICTED: TM2 domain-containing protein 1 isoform X2

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004827 True 486 mRNA 0.44 5 4591908 4600321

Neighbor

gene id symbol gene type direction distance location
AMCG00004825 NA coding upstream 273574 4310768 ~ 4318334 (+)
AMCG00004826 NA coding upstream 290124 4289809 ~ 4301784 (+)
AMCG00004821 NA coding upstream 366096 4224907 ~ 4225812 (+)
AMCG00004822 NA coding upstream 400711 4163753 ~ 4191197 (+)
AMCG00004816 NA coding upstream 459793 4128226 ~ 4132115 (+)
AMCG00004833 NA coding downstream 402999 5003320 ~ 5058089 (+)
AMCG00004834 atpaf1 coding downstream 458144 5058465 ~ 5065413 (+)
AMCG00004839 NA coding downstream 761807 5362128 ~ 5366888 (+)
AMCG00004846 LOC106613881,LOC107709201 coding downstream 1030835 5631156 ~ 5640713 (+)
AMCG00004847 NA coding downstream 1057423 5657744 ~ 5707951 (+)
G143447 NA non-coding upstream 339819 4251709 ~ 4252089 (+)
G143440 NA non-coding upstream 353048 4218037 ~ 4238860 (+)
G143414 NA non-coding upstream 457999 4133275 ~ 4133909 (+)
G143405 NA non-coding upstream 478420 4113261 ~ 4113488 (+)
G143403 NA non-coding upstream 488052 4102262 ~ 4103856 (+)
G143526 NA non-coding downstream 251842 4852163 ~ 4858164 (+)
G143630 NA non-coding downstream 861171 5461492 ~ 5461854 (+)
G143721 NA non-coding downstream 1899915 6500236 ~ 6500721 (+)
G143772 NA non-coding downstream 2034737 6635058 ~ 6635410 (+)
G143923 NA non-coding downstream 3273292 7873613 ~ 7874434 (+)
G143471 LOC107575789 other upstream 219819 4371709 ~ 4372089 (+)
G143404 LOC107757485,LOC107715094,LOC107588062,LOC107653629,LOC106613586,LOC107592717,LOC107669813 other upstream 482253 4109022 ~ 4109655 (+)
G143366 NA other upstream 642071 3949426 ~ 3949837 (+)
AMCG00004793 NA other upstream 1196750 3377815 ~ 3395158 (+)
AMCG00004788 NA other upstream 1431699 3123081 ~ 3160209 (+)
G143626 NA other downstream 823382 5423703 ~ 5424121 (+)
AMCG00004864 NA other downstream 3008580 7608901 ~ 7624070 (+)
AMCG00004868 samd13 other downstream 3072495 7672816 ~ 7692361 (+)
AMCG00004870 rpf1,LOC107745333 other downstream 3117952 7718273 ~ 7734059 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other downstream 5099846 9700167 ~ 9750777 (+)

Expression


Co-expression Network