RNA id: TCONS_00008346


Basic Information

Item Value
RNA id TCONS_00008346
length 680
RNA type mRNA
GC content 0.52
exon number 9
gene id XLOC_004408
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 45122147 ~ 45153006 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAGCAGTCAGGCGGGAATTAGAGGAACTGAATAAACCGGAACTGGAGCTGCAGTATTCTCCCAGCCGCTGGTCACCCAGGATGTCTGCCGATGATGTCATCAGAGCTCATGTGTCCGCACTGAAATCAGgcacAGAGAGAGCTCGGTCGGTCACTCAGACTCTGATGGACGTCCCGTATGGAGAAGCAGAAGGAGAGAAACTGGACGTTTATCTTCCCAGCAGCTCCAGTCCAGACGTGCCGCTGGTGATTTATTTTCATGGAGGATACTGGCAGTTCCTTAGTAAGGATGAGTCTGGTTTTCTGGCTGTCCCGCTGGTCCAGAAGGGTGCAGTGGTGGTTGCCGTGGGTTACAGCATCGCTCCGAAAGGTGATATGGATCTGATGGTGTCTCAGGTGCGCAGGAGCGTCGTGTCTGTGATTCAGCAGTATTCACACATCAGTGGACTTTACCTGTGTGGTCATTCAGCAGGAGCTCATCTAGCAGCCATGGTTCTGTCCACTGACTGGACACAATATGACGTATCACCGCAAATCAAAGGTGCATTTCTGGTGAGCGGCATCTATGATCTTCAGCCCATTCTGTCCACATATGTCAACGAGCCGCTGAAAATGACAGAGGAAGTTGCATTAAGGAACAGCCCCAGTCGCTTCCTGTCACAGCTCAAGGTCTCGTCTGC

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0017110 nucleoside-diphosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-166 Predicted to enable hydrolase activity. Predicted to be involved in tryptophan catabolic process to kynurenine. Predicted to act upstream of or within tryptophan catabolic process. Predicted to be located in cytosol and nucleus. Predicted to be active in cytoplasm. Orthologous to human AFMID (arylformamidase).

Ensembl:

ensembl_id ENSDART00000173050

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008501 lncRNA downstream 237255 44901303 ~ 44904326 (-) True XLOC_004404
TCONS_00008500 lncRNA downstream 248172 44889048 ~ 44893409 (-) True XLOC_004403
TCONS_00008499 lncRNA downstream 252549 44880825 ~ 44889032 (-) False XLOC_004403
TCONS_00008883 lncRNA downstream 282980 44852582 ~ 44858601 (-) True XLOC_004401
TCONS_00008498 lncRNA downstream 339840 44798661 ~ 44801741 (-) True XLOC_004400
TCONS_00008356 lncRNA upstream 53511 45206467 ~ 45207039 (-) True XLOC_004412
TCONS_00008360 lncRNA upstream 206156 45359112 ~ 45359656 (-) False XLOC_004414
TCONS_00008337 mRNA downstream 272 45122147 ~ 45141309 (-) False XLOC_004408
TCONS_00008336 mRNA downstream 1354 45122147 ~ 45140227 (-) False XLOC_004408
TCONS_00008338 mRNA downstream 2724 45126408 ~ 45138857 (-) False XLOC_004408
TCONS_00008339 mRNA downstream 5938 45127380 ~ 45135643 (-) False XLOC_004408
TCONS_00008335 mRNA downstream 141723 44953931 ~ 44999858 (-) False XLOC_004407
TCONS_00008349 mRNA upstream 6397 45159353 ~ 45171139 (-) False XLOC_004409
TCONS_00008350 mRNA upstream 8316 45161272 ~ 45171179 (-) False XLOC_004409
TCONS_00008351 mRNA upstream 9326 45162282 ~ 45171208 (-) True XLOC_004409
TCONS_00008352 mRNA upstream 21564 45174520 ~ 45185792 (-) True XLOC_004410
TCONS_00008353 mRNA upstream 34842 45187798 ~ 45199251 (-) True XLOC_004411
TCONS_00008317 other downstream 527847 44606851 ~ 44613734 (-) False XLOC_004396
TCONS_00008303 other downstream 802361 44337157 ~ 44339220 (-) True XLOC_004385
TCONS_00008295 other downstream 1018123 44123327 ~ 44123458 (-) True XLOC_004381
TCONS_00008250 other downstream 3766455 41375011 ~ 41375126 (-) True XLOC_004339
TCONS_00008244 other downstream 4057218 41078191 ~ 41084363 (-) True XLOC_004334
TCONS_00008372 other upstream 278577 45431533 ~ 45435014 (-) False XLOC_004416

Expression Profile

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