RNA id: TCONS_00008325


Basic Information

Item Value
RNA id TCONS_00008325
length 592
lncRNA type lincRNA
GC content 0.49
exon number 2
gene id XLOC_004399
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 44750935 ~ 44756483 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTGTTTGTCTCCCGTGTCAGTGTTCCGTCTATCATGCAGCGCTGCTTTATAGTGTCTTGTATAAATCCTAGTGTAGTTTACGTGTCGCTCCTTCATCAGTTTAGCCGATGTTTCCCTCTCACACACATCAGCGCTCTCACAGGAGTCGTTCTGTAATCTGCAAATGTGGAAACATCATTTCCACACGGATGTCGTCATTCCCAGACACAAACATGCCCTCAGCGCCTGGCAGGAGATTTGAGCCGCCATTACTGTAATGAAAAACTGAAGCATGGAGGAGCGATGCCGCTTCATTAGCACTGCGCAGCCACAGAGAGGATTAAAGCCAAACCGCTTTATGACGGAAAAAAGACGTAAGAGTTTAAAAGCACAAGAGAGGAATGGGAGAGGACGTGCATAGCAGTCGCTCCGGGCCGCAGTCCAGCACATGCCTCTGGGAAAGTGTCTGGAATTATCCAGAGCCGGATGTGGACACAATGAGCCGCGAGCTGCTGGACGCTCCGCTGTTTTTCATGCACACTTTCTGCTGTGTGTGATGCGGAAACTACAGAGAGCGAATCAGCCAACGCAAATATTGACTACAGGAAgaca

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000172855

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008882 lncRNA downstream 28604 44716828 ~ 44722331 (-) True XLOC_004398
TCONS_00008322 lncRNA downstream 128695 44618611 ~ 44622240 (-) True XLOC_004396
TCONS_00008321 lncRNA downstream 131391 44617462 ~ 44619544 (-) False XLOC_004396
TCONS_00008318 lncRNA downstream 133802 44613502 ~ 44617133 (-) False XLOC_004396
TCONS_00008880 lncRNA downstream 147310 44601861 ~ 44603625 (-) False XLOC_004395
TCONS_00008498 lncRNA upstream 42178 44798661 ~ 44801741 (-) True XLOC_004400
TCONS_00008883 lncRNA upstream 96099 44852582 ~ 44858601 (-) True XLOC_004401
TCONS_00008499 lncRNA upstream 124342 44880825 ~ 44889032 (-) False XLOC_004403
TCONS_00008500 lncRNA upstream 132565 44889048 ~ 44893409 (-) True XLOC_004403
TCONS_00008501 lncRNA upstream 144820 44901303 ~ 44904326 (-) True XLOC_004404
TCONS_00008324 mRNA downstream 103620 44637516 ~ 44647315 (-) True XLOC_004397
TCONS_00008323 mRNA downstream 103649 44637516 ~ 44647286 (-) False XLOC_004397
TCONS_00008316 mRNA downstream 128457 44606545 ~ 44622478 (-) False XLOC_004396
TCONS_00008326 mRNA upstream 41573 44798056 ~ 44801968 (-) False XLOC_004400
TCONS_00008327 mRNA upstream 102496 44858979 ~ 44876005 (-) False XLOC_004402
TCONS_00008328 mRNA upstream 104467 44860950 ~ 44873780 (-) True XLOC_004402
TCONS_00008329 mRNA upstream 122088 44878571 ~ 44898129 (-) False XLOC_004403
TCONS_00008330 mRNA upstream 142231 44898714 ~ 44906703 (-) False XLOC_004404
TCONS_00008317 other downstream 137201 44606851 ~ 44613734 (-) False XLOC_004396
TCONS_00008303 other downstream 411715 44337157 ~ 44339220 (-) True XLOC_004385
TCONS_00008295 other downstream 627477 44123327 ~ 44123458 (-) True XLOC_004381
TCONS_00008250 other downstream 3375809 41375011 ~ 41375126 (-) True XLOC_004339
TCONS_00008244 other downstream 3666572 41078191 ~ 41084363 (-) True XLOC_004334
TCONS_00008372 other upstream 675050 45431533 ~ 45435014 (-) False XLOC_004416

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_00384380_00391350.mRNA True 2084 mRNA 0.45 6 CI01000306 384030 ~ 392256 (+)