RNA id: TCONS_00008323


Basic Information

Item Value
RNA id TCONS_00008323
length 827
RNA type mRNA
GC content 0.47
exon number 4
gene id XLOC_004397
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 44637516 ~ 44647315 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCAGTGGCTCTGATCGACGTGATTATTTGTAATTTTCCGGTGTTTTTGCTTGCGGTTCTGTGTGGGTTTCTCTCGTCATGATGGGCGGCAGCAGCAGCAGGATCGCGGCTGGTTTGGGCGCGGCGCTCTTCGTCGGTTACTGCATTTATTTCGACAGGAAGAGACGGAGTGACCCGAACTACAAGAACAAACTACGAGAACGAAGAAAAAAGCAGAAGGCAGCTCAGGAGAAAGCTGGATTATCAAGGttACCAGACCTGAAGGACGCAGAGGCGGTTCAGAAGTTTTTCCTGGAGGAGATTCAGCTGGGTGAAGAGCTGCTGGCTCAGGCGTATCGTCAGCGCTCAGAGCATCAGCGACGACGACATCGAGTAGCAGGAACTCCAGCCGCTGTACGACATCACTTCCTGTCTGTCCTGAATCTACAGTCCCGCCCCTTTTCCATTCACGAACAGCGAACGCACAGAAGCGGATCTAAAGCAGCATCTGAGGAGGGGAACAGAAGTGAGAGACATCAGTTTGGTGATGGTGTTTCAGTGCGTTTGAATGACAGAAGACAAGCATGACCCGCTAACACTCATCTATTTGAGTCATTTGATTTACTAACAGTGTTGAGTTTTGGAAGTCATTGAATATCGCGAAGGCTTGTAGACGCGatgtttacactgtctttagTCTGTGATGGGGAAATGGAGAAGTCATTTGTCTGTGTTCAtgtatttaagttatttttattggCTGTGAGACGTCTGATGTGGTGAAGCACGATTAAAGGTGCTCGgagtttcctctttttttaaaatccaaataAATCAATGTCGAATAA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006605 protein targeting biological_process
GO:0030150 protein import into mitochondrial matrix biological_process
GO:0070096 mitochondrial outer membrane translocase complex assembly biological_process
GO:0015031 protein transport biological_process
GO:0016031 tRNA import into mitochondrion biological_process
GO:0005742 mitochondrial outer membrane translocase complex cellular_component
GO:0031307 integral component of mitochondrial outer membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0005741 mitochondrial outer membrane cellular_component
GO:0030943 mitochondrion targeting sequence binding molecular_function
GO:0008320 protein transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-451 Predicted to enable mitochondrion targeting sequence binding activity. Predicted to contribute to protein transmembrane transporter activity. Predicted to be involved in protein import into mitochondrial matrix and tRNA import into mitochondrion. Predicted to act upstream of or within protein targeting. Predicted to be located in mitochondrial outer membrane. Predicted to be integral component of membrane. Predicted to be part of mitochondrial outer membrane translocase complex. Predicted to be integral component of mitochondrial outer membrane. Orthologous to human TOMM20 (translocase of outer mitochondrial membrane 20).

Ensembl:

ensembl_id ENSDART00000169329

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008322 lncRNA downstream 15276 44618611 ~ 44622240 (-) True XLOC_004396
TCONS_00008321 lncRNA downstream 17972 44617462 ~ 44619544 (-) False XLOC_004396
TCONS_00008318 lncRNA downstream 20383 44613502 ~ 44617133 (-) False XLOC_004396
TCONS_00008880 lncRNA downstream 33891 44601861 ~ 44603625 (-) False XLOC_004395
TCONS_00008879 lncRNA downstream 33901 44601861 ~ 44603615 (-) False XLOC_004395
TCONS_00008882 lncRNA upstream 69542 44716828 ~ 44722331 (-) True XLOC_004398
TCONS_00008325 lncRNA upstream 103649 44750935 ~ 44756483 (-) True XLOC_004399
TCONS_00008498 lncRNA upstream 151375 44798661 ~ 44801741 (-) True XLOC_004400
TCONS_00008883 lncRNA upstream 205296 44852582 ~ 44858601 (-) True XLOC_004401
TCONS_00008499 lncRNA upstream 233539 44880825 ~ 44889032 (-) False XLOC_004403
TCONS_00008316 mRNA downstream 15038 44606545 ~ 44622478 (-) False XLOC_004396
TCONS_00008319 mRNA downstream 15266 44615067 ~ 44622250 (-) False XLOC_004396
TCONS_00008320 mRNA downstream 15276 44615218 ~ 44622240 (-) False XLOC_004396
TCONS_00008315 mRNA downstream 16111 44605727 ~ 44621405 (-) False XLOC_004396
TCONS_00008313 mRNA downstream 94434 44526892 ~ 44543082 (-) False XLOC_004394
TCONS_00008326 mRNA upstream 150770 44798056 ~ 44801968 (-) False XLOC_004400
TCONS_00008327 mRNA upstream 211693 44858979 ~ 44876005 (-) False XLOC_004402
TCONS_00008328 mRNA upstream 213664 44860950 ~ 44873780 (-) True XLOC_004402
TCONS_00008329 mRNA upstream 231285 44878571 ~ 44898129 (-) False XLOC_004403
TCONS_00008330 mRNA upstream 251428 44898714 ~ 44906703 (-) False XLOC_004404
TCONS_00008317 other downstream 23782 44606851 ~ 44613734 (-) False XLOC_004396
TCONS_00008303 other downstream 298296 44337157 ~ 44339220 (-) True XLOC_004385
TCONS_00008295 other downstream 514058 44123327 ~ 44123458 (-) True XLOC_004381
TCONS_00008250 other downstream 3262390 41375011 ~ 41375126 (-) True XLOC_004339
TCONS_00008244 other downstream 3553153 41078191 ~ 41084363 (-) True XLOC_004334
TCONS_00008372 other upstream 784247 45431533 ~ 45435014 (-) False XLOC_004416

Expression Profile

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