RNA id: TCONS_00008313


Basic Information

Item Value
RNA id TCONS_00008313
length 4095
RNA type mRNA
GC content 0.41
exon number 7
gene id XLOC_004394
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 44526892 ~ 44543082 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCTCCTCCGGCTGCAGTCACCTGCTCTCTCCATCacctctctctctccgtctctctctctctctctctctctcagtgagTGGTGCTGATGCGAGCAGCAGTGATGGAGTCTCCTCCGTCTAAcacttctcctcctcctcctccatcatCATCCCTCACTCCTGCCGTTCCTCCATCAGTGAAGCTGGGCCTGACGGCGCTCTACACGCTCTTCTACTGTGTGCTGTTCATCTTCGTGTACGCTCAGCTGTGGCTGGTGCTGCGCTACAGACACAAGCGCTTCAGCTACCAGACGGCGTTCCTGTTCCTGTGCCTGCTGTGGGCGGCCCTGCGCGCGCTGCTCTTCTCCTTCTACTTCAGGGACTGCGGGACGGCCAACACACTGCGGCCCTTCTGCTTCTGGCTGCTCTACTGCTTCCCTGTGTGTCTGCAGTTCTTCACACTCAGCCTCATGAACCTCTACTGCGCTCAGGTGTTCTTCAAGGCCAAGTCCAAGTTTTCTCCTCATCTGCTGAGATACAAGTCTCCTCTGTATGTGCTGTTCTTCGGGGTCAGCCTGCTGTTTCTGCTGGTCAATCTCAGTTGTGCGCTGCTGGTGAAGATGACCGACACTCCAGTTAAGAGTGTGGTTCTGGTTCGCGTCGCCATCAACGATTCGCTCTTTGTTCTCTGCGCCGTGTCTCTCGCCGTCTGCCTGTACAAAGTGGCCAAGATGTCCATCGCCAGCATCTACCTAGAGTCCAAGgGCACATCTGTGTGTCAGGTGACCGTGATCGGGCTGCTGGTGATCCTCCTGTACTCCTCGAGGGCCTGCTACAATCTGGTGGTTTTGTCCCTGACAGACGTCCAGAGTATAAACTCCTTCGATTACGACTGGTACAACGTGTCAGATCAGgcGGATCTGCGCTCCAGTCTGGGAGACGCGGGTTATGTGGTGTTCGGGGTGATTCTGTTCATCTGGGAGCTGCTGCCCACATCACTGGTCGTGTTTTTCTTCCGCGTCCGCAAACCTGCACAGGACCGGAGCGGCTCTGCTATTCCCAGCCACGTGTTCTCCAACCGGCCGTATTTCTTCGATAATCCCAGACGATACGACAGCGATGATGATTTAGCCTGGCCTTCACATCCCGTCACCACCTCAACCAGtttatcGACGGACTGCTCGGACTGGGGGAGCCGCAGCAGCAGTTTTCTGGTTCATCTTGGAGGAGACGACCAGCGCTCGACTGTGGTGACGGCAGGACTAAACCGCTAGCACTCGCGCAGCCACAGCGCTAACACATCCACACGTCACCGAGAGACAGTCGCCACGGCAACAGCTGATGACGACATCAGAGTAACAGAAGATCAGCCTGTGTTCAGAATGCACGACTACACTGCGCAGCACtattaataacacacacacacacacacacacacacacacacacacacacacacacacacacacacaatggctaaatttaaataactaacacacacacacacactgtatactaTAAATAACTCCCTCTCACACACCCACTGTGTACTATTAATAACTCACACGCACATACAATGCGTAATATTAATAACTAACACACACACCCACTGTGTACTATTAATAActcacacacactactgacatCACTGCACActtcatacagtacacacactacAGACTAATAATACACACACCGTGTACTGTTTAACACTCATTACACTAAACACAAAGCAAGAATCTCTGAGCAAAACCGAACCTGTTCAGTACTGAATGAATCATTCACAGTCAGTGATTCAGTGATTGATTCATAAAGACCCCTTCTTTgattctaaatgaatcagcttaTTTGAATGAACCATTTGAATGAATGACTCTGTGAATCACTCTTTAATTATCCATGACagactaaaaacattttttttatgaggTGGAATTCTTATGGATCAGATTAATTCTAAGTGAATGAGTTTATTTGAACGAATGACTCAGTGAATCACTCTTTATTTCTCCATGATAGACTAAAACCTTTATACAAATTTGCACTTAATATGGAGCAGAACATTTATGAATGTCAGAGCAAAACTGAACCTGTTAATTACTGAATGAATTATTCAGTCAGTGATTCAGTAATTGATTCATAAAGACCCctgctttgtttttaaacaaatcagctgatttgaagGAATCATTTGAACGAATGGCTCAGTGAATCACTCTTTATTTATCTGTGGCAGTCTGAAATCTTGTTTATTTACTGACTTTTATAAGAAGCAAAACATTCATGAATCTCATACCAAAACTGACCCtatttattaatgaatgaatcatttccaATCagtattttagtgaatgattcataGAGACTTTTGCTTTGTTTCTAAACGAATCTGCTTATTCGGAATCATTTGAACGATATTTATTCATGACAGACCAAAACCTTTTTATGTACGGCATTTCTTAGGGATTACAACATTAATGAATCTTAGAGGAAAACTGAACCTGTTCATTACTGAATTAATCATTTCCAGTCAGTGATTGAATCATAAAGACCCTTGCTTTTTTTCTAAACAAATCTGCTGATTTGAAGGAATCATTTGAACGAATGGCTCAGTGAATCACTCTTTATTTATCTGTGGCAGACTGAAATCTTGTTTATATACTGACTTTTTTAAGAAGCAGAACATTCATGAATCGCATGCCAAAACTGAACCTAttcattaatgaatgaatcatctCCAGTCAGAGTTTAAGTGAATGATTCATATTGATCCTtgctttgtttctaaatgaatcagctgaTTTGAATGGATCGTTCGATTGGGTGACTCGACTATTTATTTATCCACAACAGACTGAAACCTTATTTATGGAGCAGAACATTAATGAATGTTAAGAGCAAAACTGAACCTGTTCATTACTGAATGAATCATTCAGTCAGTGATTGATTCATTAAGACCCCTGCTTTGCTTCTAAATGAATCAACTGATTTGAAGGAATCATTAATTGAGTGACTCATCTATTTATCAACGACAGACTGAAACCTTATCTATGGATCAGAACATTTATGAATCTCAGATCAAAACCGAACCTGTTCATTACTGAATGAATCATTCACAGTCAGTGATTGATTCATTATGACCCCtgctttgtttctaaatgaatcaactGATTTATATGGAACATTCGTTTAGATGACTCAGTGAATCACTCATTAAGAAACTAACTATTCACCAGCAGAAGATTTGAATCTTACAGCAAATCTGAACCGGTTCATTACTGAATGAATCATTCCCAGTGAGTAATTCAGTGAGTGATTCATAGagacccttgctttgtttctaATTGAATTAACTGATTTGAAGGAATcgtttaaatgattaaaatcatTAAGAAACAGACCCTTTATCCATGTCAGACTGCAACTGTATTTATAAATCAGAACATTTATGAATCTTAGAGCAAAACTGAACTTGTTCATTACTGAATGAATCATTCAGTTAGAGATTGATTTATAAAGACCCCTGTTTTGTTTCTAAGTGAATCAACTTatttgaatggatcatttgattgGATGACTCAGTGAATCACTCATTAAGAAACTGACTATTTATCCACGACAGACTGAAACCCGATTTATCGAGCAGAACATTTAGGAGTCTTAGACCAAAACTGAACCTGTTAATTACTGAATGAATCATTCACAGTCAGTGATTCAGTGACTGATTCATTAAGACCCTTGCTTTGATTCTAAATGGAATCAACAGATCTATTACTCCACGACAGACTGAAACTCCAGCAGTAGTATGCTTATGTTGCTGTGCATTCTGAACCCAGATCAGTGCTGTAAATCTGTGTACATTCACTCACACTCACATTGTGACTCCAGTACAGTAGTTTTGATCAGAATGATGAACTAACGTGTGTAAGGCATGATGACTTTGTGTTTATCATCGTTTCACTTAGATTAAAGCACACTTTAACACTTACGAGAAGCActatataattatgtatataaataaatatatatttcactgAAACGTGATTCTCATTTGTTGATTTGTAATGAGGATGTTTCGTCATctttcatcaaaaaataaatgatttgctGTTATA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-100721-2 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human GPR137B (G protein-coupled receptor 137B).

Ensembl:

ensembl_id ENSDART00000099568

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008878 lncRNA downstream 1962 44522806 ~ 44524930 (-) True XLOC_004393
TCONS_00008877 lncRNA downstream 75232 44451240 ~ 44451660 (-) True XLOC_004390
TCONS_00008876 lncRNA downstream 76543 44447695 ~ 44450349 (-) True XLOC_004389
TCONS_00008875 lncRNA downstream 141143 44384814 ~ 44385749 (-) True XLOC_004387
TCONS_00008294 lncRNA downstream 406538 44100339 ~ 44120354 (-) True XLOC_004380
TCONS_00008879 lncRNA upstream 58779 44601861 ~ 44603615 (-) False XLOC_004395
TCONS_00008880 lncRNA upstream 58779 44601861 ~ 44603625 (-) False XLOC_004395
TCONS_00008881 lncRNA upstream 59162 44602244 ~ 44603615 (-) True XLOC_004395
TCONS_00008318 lncRNA upstream 70420 44613502 ~ 44617133 (-) False XLOC_004396
TCONS_00008321 lncRNA upstream 74380 44617462 ~ 44619544 (-) False XLOC_004396
TCONS_00008312 mRNA downstream 27885 44495858 ~ 44499007 (-) True XLOC_004392
TCONS_00008311 mRNA downstream 27917 44491762 ~ 44498975 (-) False XLOC_004392
TCONS_00008309 mRNA downstream 41130 44474371 ~ 44485762 (-) False XLOC_004391
TCONS_00008308 mRNA downstream 41192 44452261 ~ 44485700 (-) False XLOC_004391
TCONS_00008310 mRNA downstream 41192 44474412 ~ 44485700 (-) True XLOC_004391
TCONS_00008315 mRNA upstream 62645 44605727 ~ 44621405 (-) False XLOC_004396
TCONS_00008316 mRNA upstream 63463 44606545 ~ 44622478 (-) False XLOC_004396
TCONS_00008319 mRNA upstream 71985 44615067 ~ 44622250 (-) False XLOC_004396
TCONS_00008320 mRNA upstream 72136 44615218 ~ 44622240 (-) False XLOC_004396
TCONS_00008323 mRNA upstream 94434 44637516 ~ 44647286 (-) False XLOC_004397
TCONS_00008303 other downstream 187672 44337157 ~ 44339220 (-) True XLOC_004385
TCONS_00008295 other downstream 403434 44123327 ~ 44123458 (-) True XLOC_004381
TCONS_00008250 other downstream 3151766 41375011 ~ 41375126 (-) True XLOC_004339
TCONS_00008244 other downstream 3442529 41078191 ~ 41084363 (-) True XLOC_004334
TCONS_00008236 other downstream 3830756 40678213 ~ 40696136 (-) True XLOC_004327
TCONS_00008317 other upstream 63769 44606851 ~ 44613734 (-) False XLOC_004396
TCONS_00008372 other upstream 888451 45431533 ~ 45435014 (-) False XLOC_004416

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_00291753_00295570.mRNA True 1417 mRNA 0.50 6 CI01000306 291344 ~ 295570 (-)
bowfin (Amia calva) AMCG00015477 True 2543 mRNA 0.54 7 CM030132.1 9997063 ~ 10003088 (-)