RNA id: TCONS_00008875


Basic Information

Item Value
RNA id TCONS_00008875
length 936
lncRNA type intronic
GC content 0.42
exon number 1
gene id XLOC_004387
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 44384814 ~ 44385749 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGGAGAAACACACAGGTGGGTGAAACAGCAGGTAGAGCTCTTCTTCTTGTCTTATTGGCGGTTTGCATTCTTAAACAGAGCATTACCGCCCCCTACTGTGAGTTGTGGGTCAGAGACTGAATTTCCTTTTCCTCTGGACTCTTCAAGGCAGAGTTCTGATCTGACTGTGTGCTTTCAGAGAGGCTGTGATTGCGGTGCAGGTCAGTGTAATGCTGCAGAGTGTACCTGCGGTGGAGTGTGATGCTGAGCATGGAAACCCTACAGGTGAAACACACCTCTGCTTTGCTTTAATCTGGATATCTTGTGTTGAGTGATTTCATTAATGAAGGAGTCTTTGCTTTCACAACACCTGAGTGAAGTATTCCTGTTCATGTTATCAGTCTTCTGTGATGGATCTTCTGTCTGTCACTGGTGTTTTCTGTTGAGTTTATTCCCGGTCAGCTGTCATAGTAATgtcttgattagctgcttcaggtgtgttgaaTTAGAGTTTGCATGTAAACTGTTCTGTTCTGCTTCTGACTGACCTGTATGATGTGTGTTTCAGATGTAGAAATCCTGCTTCAGCTTGCTCTCCTCGCTTCATTTAacagtagtggtgggcaaagtgaggcttcatgaaactgaaacagttgaagcaaatgtgtcaaagctTTGAAACGTTTCAaaactctacagtgacacctagtggtaatTGTTATACATTGCTCTGGAACAGTTTCAGCAAAGAACaattgagcaaattgaggtattaaaaccCACTTTGTACCTTTGAACCTACAAGTGTTATAGCAGAGCGGTCAGAGTTCCTGACTATCATGCAGGGATACTGGGTTCGAATCCAGGCAAATGCAGCTATGttgaaatgctctgttcttgtattgttttgtttcaacattggtcagACATCAGAATAAACactatttgtgaataaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008294 lncRNA downstream 264460 44100339 ~ 44120354 (-) True XLOC_004380
TCONS_00008293 lncRNA downstream 268366 44100339 ~ 44116448 (-) False XLOC_004380
TCONS_00008292 lncRNA downstream 276145 44100339 ~ 44108669 (-) False XLOC_004380
TCONS_00008874 lncRNA downstream 668510 43713710 ~ 43716304 (-) True XLOC_004376
TCONS_00008873 lncRNA downstream 918294 43461395 ~ 43466520 (-) True XLOC_004374
TCONS_00008876 lncRNA upstream 61946 44447695 ~ 44450349 (-) True XLOC_004389
TCONS_00008877 lncRNA upstream 65491 44451240 ~ 44451660 (-) True XLOC_004390
TCONS_00008878 lncRNA upstream 137057 44522806 ~ 44524930 (-) True XLOC_004393
TCONS_00008314 lncRNA upstream 143821 44529570 ~ 44530479 (-) True XLOC_004394
TCONS_00008879 lncRNA upstream 216112 44601861 ~ 44603615 (-) False XLOC_004395
TCONS_00008304 mRNA downstream 37227 44340212 ~ 44347587 (-) True XLOC_004386
TCONS_00008302 mRNA downstream 108128 44265722 ~ 44276686 (-) False XLOC_004384
TCONS_00008301 mRNA downstream 108128 44265722 ~ 44276686 (-) False XLOC_004384
TCONS_00008300 mRNA downstream 108128 44265722 ~ 44276686 (-) True XLOC_004384
TCONS_00008299 mRNA downstream 170047 44178560 ~ 44214767 (-) True XLOC_004383
TCONS_00008305 mRNA upstream 15115 44400864 ~ 44409856 (-) True XLOC_004388
TCONS_00008307 mRNA upstream 66484 44452233 ~ 44484952 (-) False XLOC_004391
TCONS_00008306 mRNA upstream 66484 44452233 ~ 44484952 (-) False XLOC_004391
TCONS_00008308 mRNA upstream 66512 44452261 ~ 44485700 (-) False XLOC_004391
TCONS_00008309 mRNA upstream 88622 44474371 ~ 44485762 (-) False XLOC_004391
TCONS_00008303 other downstream 45594 44337157 ~ 44339220 (-) True XLOC_004385
TCONS_00008295 other downstream 261356 44123327 ~ 44123458 (-) True XLOC_004381
TCONS_00008250 other downstream 3009688 41375011 ~ 41375126 (-) True XLOC_004339
TCONS_00008244 other downstream 3300451 41078191 ~ 41084363 (-) True XLOC_004334
TCONS_00008236 other downstream 3688678 40678213 ~ 40696136 (-) True XLOC_004327
TCONS_00008317 other upstream 221102 44606851 ~ 44613734 (-) False XLOC_004396
TCONS_00008372 other upstream 1045784 45431533 ~ 45435014 (-) False XLOC_004416

Expression Profile

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