RNA id: TCONS_00008299


Basic Information

Item Value
RNA id TCONS_00008299
length 7274
RNA type mRNA
GC content 0.43
exon number 10
gene id XLOC_004383
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 44178560 ~ 44214767 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTACAATAACTTCCAACAGTTTCTCCTGAAACTATCGACGCTTGAGGATTCATGTGTTCGTCCGTCAAGATTTACGTGTGTTTTTATCAGTGTTTTAAGCAGAGAATGAGAACCAACGCGGCTCTGGAAGAGCTGAATGAGTGACCGGCGCATGGAGATTCTGCAGGCTGGGAATGGAGCGCTTTCCCCGGGGGACGCAGGTGAGGATGGACCGCTGTTTGTGGAGCTCCAGCGGCGCGGAGGATCACCGTGGGGCTTCACTGTCAGAGGGGGACTGGAGTATCGCGAGCCGCTGATCATCACCCGGgtaGAGGACGGCAGTGGAGCGGCGCGGGGTCGACTGCAGATCGGTGACCAGATTGTCAGTGTTAACTCAGTCCTGCTCAGCGGGTACAGACTGGAGGCCATTTGTCTGATTAAAAGCTCACACAACACACTCTCTCTGGGAGTAATACGGAGGAATGAATCGTCATGTAGACCCCATTCATGGCACTCAGCTAAATCCTCGGAAAGCTCCAACCCAAACGACTCCAAATCTGAACCCAACCCAGCACCTGACCCCACTTGGCAGACAAAATGTGATCCTGGGTCACCCACAAAAGAATTCACCAGCTGTTGGGGACAGACCAATCTGCGACAAGCATCCTGCCAGTTCAGCTCGGTCAGAAATATGGAAAGCGTAGAGCCCTCATCTCATGCTTTCTCAAAAGAACAACCTTTAACAAGCAAACCCAATGGAGGAGCAGATCACGAGGTGCTTGAAAGTGCAATCAGCAAACCTGCTTTGCCAGGCAATGCATTTTCAGGCACAGCTGATCATGGTGCACCTCGGGGTGCCAATCCCACAGAAGGGGTGTTTTACAGAGGCGATCTAACAGTCCCGAGTGACTGCCACAGATACCTGCAGATCCCCATAGGCAATGGGGGACGAGTGAGTCCCAGTGTTGAGGAGCAATCTAGCTCCAGACTCTCCTCTACTGCGAGATCAAACCATAGACCTGTGTGGCATATTCCAGAGAATAAGATGTCCAGTTCTGAagctcctcctgctcctccttTGCGGAGTGATAGTTTCACTGCCACCAGAGTTCATGAGAAGAGCTTAGTGGGATTGTTCCCTGAGGGACACACTGTATATCCACTACAGAGACCTCCCTGTAGAGCTGTGGACAGACAATTAGAGGACGTGAGACACAGCTACAACTCGCCTCCAAAGAAGGACTACCTTGAGCCATACCTTCCAGTTGAGGACTACCCAAATCAGCTAAACCCTACCAAACTCTTTTCCCTGTCAAGCACTGATGTAAGACAAGGCCAGAATCCGTTTGCCTCTGAGTTTCAGCATCAGAGACAGCACAGTGATGATAGTCCATTTTCTGTGTATAACAACTCTACATGTTCATCAAAGTCTCAGAGTGTTGGGAGCTACTACCGAAGTTTGCAAGATTTGCCTAATAATGTTAGCAATCAAAACAAAACTAGAACCAGCACAGTCTTTGATCCCAACCATGATGGCCAAGCTCATTTCCGTTACTACTGCATCACTGCCCAACAGCCATACCTGGAGTCATCTTCTCACTGTCGGATGGTAGATGAACAAAGTTCTGAAATGGGAAAAGCACAAGGTGCCACAGATAGAAGCTTTGTAGGTTCTCAAAAGGTTATAAAAGCAAAGCATCCCCAACTGTACCTTAGTTTACCCGAGAACAAGAGATCCAATGGTTACAACAAACAGTCCATCAGTCCAGCTTCAGCTCAAGCTGTGTCCCCGATATCAAATAATTTGATTTCAAAGCACAGTTCTGTGGAAAGAGAgactcaaaaaaagaaagataagcCTCAGCCTTCCAGGCACATTCCAAACCACCAGACTGAGCAGAACTCCATGTACACTTACCAACATGACAATCCATGGATCAGCAAGCAGGATCTGAAGATCTGTCCCCACAAAACCCCCTTGTTGCATTCATTGGCCCAGGAGAGTAAGAAAATGGCAGAAAATTCGATTACAACAGCCTCCAAAGGAGGTAGTCATGAATCAAGTGATGCCAGCAGTGGAAAGCTGGGAAGACGAAGTGACCGCTATGCCACAACTTTACGCAAAGAGATTCAAAAGAAGAGGGCTCAACTTCAAAAAAGCAGAAGCGCAGCTACCTTGACTTGCTCAACTGAAGTTGAGGAGGACTCTGACATATGGAAGTCCAATGAAACCTCCACATCCTCTTCTGATGGTTCCTTTACTAACACGTACAAGGATCATCTGAAGGAAGCCCAAGCCAAAGTTCTACAGGCTACATCATTCATGAGGAAAGATCTGGAGCTTCCTGGGAATGAAGTTGTGTCTGCTCAACTTCCCAAAAGACCTGGGCAAGTCACCCGCATTGGAGGTCGTAAACGCTTTCCCatggataaaaaaatacattcctTCTCTGAACCGGACAAGATCAATGAGGTCGGAGTTGAAGATAAAGCTGGCGGGTCTTTTGCAGACCGATACAAGTTCTTTGAAGGTTCTGGCAAAGCGGTTGTCCAAAAGCCCATTCCAAAGCAGTCCCTGCTTGGTCCTACTGTAGACCACAGTGAGAGAAAGACTGGAGAAGCTGAAAGTATCCCTCGAGTACTGTTAAAGCAAAGTAAATCCAGCCATTCTGACCTTAATGCAGATGAGCAACAAAGGCTTGGTACATTTGCAGAATATGAGGCTACATGGAACTTGCAGAAGAAGCAAGTGGAAAGAAGAAACACAGGCAGATACCATTCAGCTGAAAATATTTTGGACTCAGGCTTGGAGGAATCCAACAGTGCACTGTGTGTGCATGAAAGATCACGCTCCTCACCTTCTGCTGACTTCTATGGACAGAAACTTCCTTTGCCACCCAGAAAGTTACCTTTGGATTCTCCACCTGAAGCCAAAGACCAACAGGAGGCTCATATTTCCAGTGCATCTGAAAAGGAACACAATGCACTTAATATTTCCAAGTCTCAAGAGTCCATCACAATGAGCATTCTGGACAATTCAGTTGAACCTCTTGGATACAACCAGAAATCCAGATCTGACACCAAGCAGCCAGCACCGATTACTTCACAACATCTCCAGGTTCCCATGTCAGAGCAACTTCTTCCCAAAAACAATGGTCTTATACCACAACACAAAGAACTTGAAACCACCTGCCCAATCATGGCTTCCCTAGAAGTCAGGATTCAGACCTTTTCACCAGAGCCAACACAAGAACGCCTGAGACTCAATACTTCAGAACCTCTGGACGGAGACATGCATGCACAAGTGGATGAGCATAAATCAGAGAGGATGTTATCTCCTATTCCACATAATTCAGCTGGTTCCCCTATCCCTCCCAAGCAGAAGGCTGACCTGACGGTAACCTCAGCCAGCAGAACACGTTCTCCTTCTCCTCAGTTCTTTCCACAGAGACTCACGGATGAACCTCCTGCAAATGTGTACAAAAAGGATCCATGCAGTAGTAAGGTGGAAGAGCCAAACACTCCTGGCAGAAAGGTCCCCATACAGATTGTTTGTACAGAAAATGGTTCAGAGAGAGACATCCGAAACTATCTGCTGCACTCAGAATCATCTGAAGAGCCTCAAACTGGCCAGCTAAAAACCCTGGAATCTTCAGAGCAATGTCATGCACCATTCATCGCATACTCAAACCAGATAGAAGAACCAATATTAGACCCTTTCAAACCAATGAGGAGCAACGGTGTGAGCGAACACTCGGAGGACGATCTGAAGCGAGAGGAGCTGGCCAGAGATATAATGGGGAAAGACAGGAGTCTGGTGGACATTCTGGACCAGAGAAAGATGAAGACCACCATGGATCTGATGGAGGGAATATTTCCACAGGGCGAGCAGATACTGGAGGGAGCGCAGCAGAGGAGGAAAGCGGCGTCCAAACAGACGTCTCCTAAAAATGCACAGCAGAGGATGGAGGAGAGTCTGTCTTCATCAGTCTCGTTGGTCAGCAGTTCATCATATTACAGCACATCTGCACCCAAAGCAGAGCTGCTCATTAAGATGAAGGACATGCAGGAGCAGGACTCAGAGGATGAGCTCACTACTGACCTCTCCAGCAAGAAGCAAGAGCTGATGGACAGTTTGAGCAAGAAGCTGCAGGTTCTGAGAGAGGCTCGTGAAAGCCTGCAGGAGGACGTTCAGGATAATAACGCTCTGGGAGAGGAAGTGGAAGCCACAGTCCAGAGCGTCTGCAGAGCCAATGAGCTGGAGAAGTTTCGCATGTTTGTTGGAGATCTGGATAAAGTGGTCagtctgctgctgtctctgtctGGACGGCTGGCACGTGTGGAAAACGCACTCGATAACCTGGAGGAGGGAACATCCGCTGACGAGAAGCAAACGTTGACGGAGAAGCGCAGGCTGCTGATTGGTCAACATGAAGACGCCAAAGAGCTGAAGGAGAATCTGGACCGCCGCGAGCGCGTGGTTTATGAGATCCTGACGGGATACTTCAGGGAAGAGCAGCTGGCAGATTACAGACACTTCGTTAAAATGAAATCGGCGCTTATTATAGAGCAGCGCAAACTGGAGGACAAGATAAAACTGGGAGAAGAGCAGCTGAAGTGTCTGAAGGAGAGTCTGCCGCTCGAACAGAGACTCCTGTACTGATGCATTCATCTTCTCTCACACATCTCACTTTTATTTATCCAAGCATTGCTGCGCATCCGCTCGTGTATTTGCCGAttcaaagggttagttcactcaaaaataaacagtCTGTCTTttattattcaccctcatgttgttgcAATTCCAATGAGGCTtttgtttatcttcagaacacaaattaagagattttagatgaaatcctggagctctctcatcctctatAAACAGCAagacacttccttcagctcctccagggggatcctgaggtgttcccaggccagcatagtccctccagcgtgtcctgggtcttcccagaGGTCTCCCCCCATTGGGACATGCCTGGACAAGCCTCCCTAGGTAggcaggaggcatccaaaacagatgcccaaaccacctcagctgacttctctggatgtggaggatcagcggctctactccgagctccaaCATCATGCAAATTacagaacttttattttggatgtgattaatctttgcTCAGCACTAAAAATTATCAGATAATTTCCTGTGACTTCAGTGgatcaactgtaatcatacgacgctccaaaaacacttttgtgcatCGAAAAAACTGCACAATTTCAGATTAGGATGTGAGTTTATGTGTTTACTACAGGCTAtttgtgtttgcattttttttatttatttttttgcacaaaagtgtttttagGGTTTAATTATGGGCAAACTTgaatttttgcgtgaactaacccTTGAACTGCTGATTTAATTGAAAGGATCTCTTTTAGCCCGTACATATGTTTtttctacatgtgtgtgtgtgtgtgtatgtgtatatatatgtatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatatatatatatatatatatatatatacatatacatacatgcatacatacacacacacacacacacacacacacacacacacacacatttaactaatttattttgctaCTGAATGCTGATGGTGCTATTAACTCAAAGGTTAGGTCTACTTTCTCTGAACTAGATCCACAATGAAAGCTCTTTTATTATTAAGTCTGTGTTTGCTTCAGAACATCTCAAATATCAGTTAATAGTATGTTTGGATTTATTTATAGTTTCCAATCTCACTGTGATAGAACAATAGTTTATAGATATATGAAATATTGTTCATGAATACATTTTCAATGCACTTCCGCTGcaataaattgaatttaaaacagAAACTGAGTGCTTTTTAAGCTGCTGTAAATGTGGACGCAGTCTTTAATGATGCACAAAGATGCTCATGGTAAGTTTTTCCATCAATAGTAATCAGGGATgtgatttttttcaatataaatacatattccCGTATTTTCAGAGCTCAATGTGGCGTCTGTAATTTGCGTAAATCTGAAGTTTTACTCATAATCTGATTAATAATTGGCATATCCCTCATGATTTTATGATCTTTATGAGTCTTTACTGTGTTTTGTGAATTCTCAGTGTGTTTGGGTTTTACGTTGTTGACAGTAATCCTGAACTGTTGTCACTTATTTACAAAATCATATTCATGAGTATTTACACAGGATTTCTGAGCATCAGGACGTCGAATTTCAGAAAGCTGAAGATGTGGACGTGTGCTGATATACGGTAATAACATCATTTTTACTATTTACTTTACTTAGATGTATATTTTGAGTTTTCCACAAACAAGATATGACAATATTTATATTCAGCATAACATCAGTTTGCATGAAGTCTTCAATTGCCATAAAGAATAAAATGACACACACTGAATATTGTCTATTATATTAACATAACTGCATAAATATGAGATTGTGATATGATTTTTTGTCATTGTGtgatttaaaattatgtttattaatgGTTTTAATAGAAAGCAACAGTACTAAGGATTATTACTTAGgactaaaaatacaaaaaacattttaataaactgaattaaaaaatattaaattaataattaaaagaacctatgaagcaaaaataattacatttgaaatGAGCAACTATATATTAGTTGCCTATGAtatgttaaattaattaatgtaagtTTTAAGTAATTGAAAGgtttttaattattgtaaaaaatattattgttaaattgtaaaaataaaatactaattaaaacaAATCATGACTTAAATAATGCCCTAAATTAcctaaaattattatataaaaacctgatatactgtatatatatatatatatatatatatatatattctctctaTCTTTATAGGTTTTCCACTAAAATGCTCATTTAATCTAAGTTTTAATCTTAgtcaattattattaaattaattaattaattaagaagtttattattaatagtaattttgattcgatccaagaccgacgacgtgatgatcccatggtttccataatcctggaccaggccgtatcctgagcggctgcagtggtggtcatggaggagtggagagcatgagactgattcctgtgacgctccagggacagacgagtctctcTGACGTCCAGtttctccagcgcctagactgcagctctgcacaagacgtttggccagcggagaaatgttcgtgcccaactgagtctggtttatCTCTAGgtgttttttcttcactttcgccaattggtgaagt

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000181342

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008294 lncRNA downstream 58206 44100339 ~ 44120354 (-) True XLOC_004380
TCONS_00008293 lncRNA downstream 62112 44100339 ~ 44116448 (-) False XLOC_004380
TCONS_00008292 lncRNA downstream 69891 44100339 ~ 44108669 (-) False XLOC_004380
TCONS_00008874 lncRNA downstream 462256 43713710 ~ 43716304 (-) True XLOC_004376
TCONS_00008873 lncRNA downstream 712040 43461395 ~ 43466520 (-) True XLOC_004374
TCONS_00008875 lncRNA upstream 170047 44384814 ~ 44385749 (-) True XLOC_004387
TCONS_00008876 lncRNA upstream 232928 44447695 ~ 44450349 (-) True XLOC_004389
TCONS_00008877 lncRNA upstream 236473 44451240 ~ 44451660 (-) True XLOC_004390
TCONS_00008878 lncRNA upstream 308039 44522806 ~ 44524930 (-) True XLOC_004393
TCONS_00008314 lncRNA upstream 314803 44529570 ~ 44530479 (-) True XLOC_004394
TCONS_00008296 mRNA downstream 15396 44144612 ~ 44163164 (-) True XLOC_004382
TCONS_00008291 mRNA downstream 140868 44030729 ~ 44037692 (-) True XLOC_004379
TCONS_00008290 mRNA downstream 147598 44019844 ~ 44030962 (-) True XLOC_004378
TCONS_00008289 mRNA downstream 229675 43948091 ~ 43948885 (-) True XLOC_004377
TCONS_00008288 mRNA downstream 704736 43470176 ~ 43473824 (-) True XLOC_004375
TCONS_00008302 mRNA upstream 50955 44265722 ~ 44276686 (-) False XLOC_004384
TCONS_00008301 mRNA upstream 50955 44265722 ~ 44276686 (-) False XLOC_004384
TCONS_00008300 mRNA upstream 50955 44265722 ~ 44276686 (-) True XLOC_004384
TCONS_00008304 mRNA upstream 125445 44340212 ~ 44347587 (-) True XLOC_004386
TCONS_00008305 mRNA upstream 186097 44400864 ~ 44409856 (-) True XLOC_004388
TCONS_00008295 other downstream 55102 44123327 ~ 44123458 (-) True XLOC_004381
TCONS_00008250 other downstream 2803434 41375011 ~ 41375126 (-) True XLOC_004339
TCONS_00008244 other downstream 3094197 41078191 ~ 41084363 (-) True XLOC_004334
TCONS_00008236 other downstream 3482424 40678213 ~ 40696136 (-) True XLOC_004327
TCONS_00008222 other downstream 3995764 40182681 ~ 40182796 (-) True XLOC_004319
TCONS_00008303 other upstream 122390 44337157 ~ 44339220 (-) True XLOC_004385
TCONS_00008317 other upstream 392084 44606851 ~ 44613734 (-) False XLOC_004396
TCONS_00008372 other upstream 1216766 45431533 ~ 45435014 (-) False XLOC_004416

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_00681384_00689565.mRNA True 4616 mRNA 0.49 10 CI01000306 681384 ~ 689812 (+)