RNA id: TCONS_00008296


Basic Information

Item Value
RNA id TCONS_00008296
length 2813
RNA type mRNA
GC content 0.54
exon number 12
gene id XLOC_004382
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 44144612 ~ 44163164 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGTATGTCGACGTCCTGCCGCATCAGTTTATTCTGATGTTATGATGGATAAACACTACTATATATCACCGTATATCTGATTTAATTACACACACGACGACATGGCGGAGGCTGAGGGCATCAGCAGTGCGACTCCCACTGAGGAGATGAACGGCGCCGGGAACCTGATGGACTTCTTAGATGAACCATTTCCAGATGTTGGCACTTATGAGGACTTTCACACCATCGACTGGCTCCGAGAGAAGTCcaaagacacagacagacaccGCAAGATCACCAGTAAGAGTAAAGAGTCCATCtgggagttcatcaagagtctgcTGGACGCCTGGTCAGGGTGGCTGGTGATGCTCCTGATTGGCCTGCTGTCAGGCACTCTGGCCGGAGTGATCGATCTGGCTGTTGATTGGATGACGGATCTGAAGGAAGGCGTGTGTTTATCTGCGTTCTGGTACAGTCATGAGCAGTGCTGCTGGACGTCCAACGAAACCACCTTCGCTGACAGAGACAAATGTCCACAGTGGCAGAAATGGGCTGAGCTGATGACCGGATACACAGAGggcgCTGGTGTGTATGTGCTGAACTACTTCCTGTACGTGCTGTGGGCTCTGTTCTTCTCCTTCCTGGCCGTGTCTCTGGTGCGAGTGTTTGCTCCGTACGCCTGCGGTTCAGGAATACCAgagaTCAAGACCATCCTGAGCGGCTTCATCATCCGTGGGTATCTGGGCAAGTGGACGCTGCTGATCAAGACGGTGACGCTGGTTCTGGCCGTGTCTTCAGGCCTCAGTCTGGGGAAGGAGGGTCCGCTGGTCCACGTGGCCTGCTGCTGTGGAAACCTCTTCTGCAGCCTCTTCTCCAAGTACAGCAAGAATGAAGGCAAACGCAGAGAGGTGCTGTCAGCTGCAGCGGCCGCTGGTGTCTCAGTGGCATTTGGAGCTCCGATTGGAGGAGTACTGTTCAGCTTGGAGGAGGTCAGCTATTATTTCCCTCTGAAGACTCTCTGGCGCTCGTTTTTCGCCGCTCTGGTCGCCGCCTTCACCCTGCGCTCCATCAACCCATTTGGGAACAACCGCCTGGTGCTGTTCTACGTGGAGTACCACACACCCTGGTACATGGCAGAGCTGGTGCCCTTCATCCTGCTGGGGGTGTTCGGAGGCCTTTGGGGGACACTGTTTATCCGCTGCAACATCGCCTGGTGCCGCCGCCGCAAAACCACCCGCCTGGGCAAATACCCGGTGCTGGAAGTGCTGGCGGTGACGGGCATCACTGCGGTGCTGGCCTTCCCGAATCCGTACACTCGCCGCAGCACCAGCGAGCTGATCTCAGAGCTGTTCAATGACTGCGGAGCGCTGGAGTCCTCGCAGCTCTGTGATTACATCAACAGCCCCAACATGACCCGCCCGGTGGACGATATTCCTGACCGACCCGCAGGGCCTGGGGTCTACAGCGCCCTCTGGCAGCTCACACTCGCACTTGCCTTTAAGATCATCATCACCATCTTCACCTTCGGCATGAAGATCCCGTCGGGTCTGTTCATCCCCAGTATGGCAGTGGGTGCGATTGCGGGCCGTATTGTTGGTATCGCAGTGGAGCAGATGGCGTATCATCATCACGACTGGATCATCTTCAAGAACTGGTGCCGCCCAGGAGCCGATTGCGTCACACCAGGGTTATACGCCATGGTTGGAGCCGCGGCCTGTTTGGGCGGTGTGACCCGTATGACGGTGTCTCTGGTGGTCATCATGTTCGAGCTGACGGGCGGACTCGAGTATATCGTCCCTCTGATGGCGGCGGCGGTCACCAGTAAATGGGTGGCGGACGCGTTTGGGAAGGAGGGGATCTACGAGGCGCACATCCAGCTGAACGGCTACCCGTACCTGGACCAGGACGAGTTCACACACCGCACGCTGGCCACTGACGTGATGCGCCCGCGCCGCAGCGAGCCGCCGCTGTCTGTCCTCACGCAGGACAGCAGCACGCTGGAGGAGGCCGAGGCGCTCATCACACACACCGACTACAACGGCTTCCCGGTGGTGGTGTCCCGCGAGTCTGAGCGACTCATCGGCTTCGTGCAGAGACGAGACCTGATCCTGGCTATcaagAACGCGCGTCAGAAGCAGGACGGTGTGGTCAGTAACTCAGTGGTGTATTTCACTGAAGACGCTCCTCAGCTTCCAGCATCAAACACTCAGCCCCTGAAGCTCAGACGGATCCTGAATCTGAGCCCGTTCACCGTCACCGACCACACGCCCATGGAGACCGTGGTGGACATCTTCAGGAAACTGGGCCTGCGGCAGTGTCTGGTCACACGCAGCGGACGTTTGCTGGGCATCATCACGAAGAAGGACGTGTTGCGTCACATGGCACACATGATGAACCAGGACCCAGAATCCATCATGTTCAACTAATCCCGTGCACCCTTCAGTCCTGTACACTTGCACACTAACAAGTGCTCACGTGGCCAAAACCAGACCTGTGCTCGCTTTactgttgttgctttttttatgccatatttatattttactgtaaGCCGCTGATCAACACTGTAAACATGTGCAATGAGAACACACTTTACGTACGGTACGTCActttaatatatctgtttattacgTGATGTGTCATAACGCAATGCAAGACGTAATTCAGACGACTAATCTACCGTGTGATATTGAGCATTTTACACTGGGTTTATCTGctctgttattatttattaatatttataacattatgaATGTTAGTTTTGATCTTCATGATCTTATGTATTGAATCATGAATATTGTTGTTGTAAAATAAACACCACAGCTCTGTTACGG

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0006821 chloride transport biological_process
GO:0005768 endosome cellular_component
GO:0005769 early endosome cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015299 solute molecular_function
GO:0005247 voltage-gated chloride channel activity molecular_function
GO:0031404 chloride ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061013-353 Predicted to enable solute:proton antiporter activity and voltage-gated chloride channel activity. Predicted to act upstream of or within chloride transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus; early endosome; and synaptic vesicle. Predicted to be integral component of plasma membrane. Is expressed in brain; eye; gill; heart; and immune system. Human ortholog(s) of this gene implicated in Raynaud-Claes syndrome. Orthologous to human CLCN4 (chloride voltage-gated channel 4).

Ensembl:

ensembl_id ENSDART00000047126

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008294 lncRNA downstream 24258 44100339 ~ 44120354 (-) True XLOC_004380
TCONS_00008293 lncRNA downstream 28164 44100339 ~ 44116448 (-) False XLOC_004380
TCONS_00008292 lncRNA downstream 35943 44100339 ~ 44108669 (-) False XLOC_004380
TCONS_00008874 lncRNA downstream 428308 43713710 ~ 43716304 (-) True XLOC_004376
TCONS_00008873 lncRNA downstream 678092 43461395 ~ 43466520 (-) True XLOC_004374
TCONS_00008875 lncRNA upstream 221650 44384814 ~ 44385749 (-) True XLOC_004387
TCONS_00008876 lncRNA upstream 284531 44447695 ~ 44450349 (-) True XLOC_004389
TCONS_00008877 lncRNA upstream 288076 44451240 ~ 44451660 (-) True XLOC_004390
TCONS_00008878 lncRNA upstream 359642 44522806 ~ 44524930 (-) True XLOC_004393
TCONS_00008314 lncRNA upstream 366406 44529570 ~ 44530479 (-) True XLOC_004394
TCONS_00008291 mRNA downstream 106920 44030729 ~ 44037692 (-) True XLOC_004379
TCONS_00008290 mRNA downstream 113650 44019844 ~ 44030962 (-) True XLOC_004378
TCONS_00008289 mRNA downstream 195727 43948091 ~ 43948885 (-) True XLOC_004377
TCONS_00008288 mRNA downstream 670788 43470176 ~ 43473824 (-) True XLOC_004375
TCONS_00008286 mRNA downstream 918357 43146352 ~ 43226255 (-) True XLOC_004370
TCONS_00008298 mRNA upstream 15396 44178560 ~ 44194132 (-) False XLOC_004383
TCONS_00008297 mRNA upstream 15396 44178560 ~ 44194132 (-) False XLOC_004383
TCONS_00008299 mRNA upstream 15396 44178560 ~ 44214767 (-) True XLOC_004383
TCONS_00008302 mRNA upstream 102558 44265722 ~ 44276686 (-) False XLOC_004384
TCONS_00008301 mRNA upstream 102558 44265722 ~ 44276686 (-) False XLOC_004384
TCONS_00008295 other downstream 21154 44123327 ~ 44123458 (-) True XLOC_004381
TCONS_00008250 other downstream 2769486 41375011 ~ 41375126 (-) True XLOC_004339
TCONS_00008244 other downstream 3060249 41078191 ~ 41084363 (-) True XLOC_004334
TCONS_00008236 other downstream 3448476 40678213 ~ 40696136 (-) True XLOC_004327
TCONS_00008222 other downstream 3961816 40182681 ~ 40182796 (-) True XLOC_004319
TCONS_00008303 other upstream 173993 44337157 ~ 44339220 (-) True XLOC_004385
TCONS_00008317 other upstream 443687 44606851 ~ 44613734 (-) False XLOC_004396
TCONS_00008372 other upstream 1268369 45431533 ~ 45435014 (-) False XLOC_004416

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_00705287_00711760.mRNA False 3132 mRNA 0.50 12 CI01000306 705287 ~ 712585 (+)
bowfin (Amia calva) AMCG00014186 True 5621 mRNA 0.49 12 CM030128.1 3617227 ~ 3629082 (+)