RNA id: TCONS_00008236


Basic Information

Item Value
RNA id TCONS_00008236
length 931
RNA type processed_transcript
GC content 0.49
exon number 6
gene id XLOC_004327
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 40677616 ~ 40696136 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTACATGAGGTGTTCACATGTAGGAACACGATGGCTTGGTTTCAGATCGCCTTCGTTTTAACTACAACCTGCTAAGACCTGCAGACTTCTGGAAACTGTCTGGCGAGGAGTGGCTTTGGGAATGAGATCATCCTCCTCAATATGGGTGAAGCTGGGTTGGATCTAAGTGTTCATCACAGCCAGTTCAGTGGACACACTTGCTGAAGTACCCAGCATGCCTCATTGAGGACGGGGGGCAAATTGGCCACATTCCACAGCATCATCCCCTATTAGAAAGTCTGTGCTTGGATAGAGGACACAAAAGACTGACCCTGGAGATTTACAGTGTGCACACAGAGGATGAATGCGAGACGCTGAGGGACAAAAGTGCAGGTTAAATGTGACCACGTCGGATTGAcctgaaagaaaagaaagaggtGGTTGAAGAGGCAGCGGAGGCTGCGAAGGAAAACGGCAGCGAAGACGCACCTGCCAATGGAAATGGAACAactAACGGTGCTTCACATGAAGAAGAGGAAGCTCATGAGGATGAAGAGGGTGGGGAGGACGAGGAGGCAGGAGAGGCCGAGGAAGAGGAAAACGGTGCTGAGGAAGAGGCAGCGGCAGAGGAACACCCTGTGAAACGTCCTGCAGAAGAGGAGGAGGCAGTGGAGACAAAGAAACAGAAGACAGAGGAGAACGGCGACTCCACAGAGGCTGCTGAAGTCAAAGCTTAAAGTTCATGCTGCCATTCAGTAGCTCTGTCTGTATGGTCAGTATGACCTAGTAGAGTTTGTGCTTTCTGTAAATCTCACAGACATTCCTTTGCCGCTACAACATCTTCTTTTATTGCACTGAGGCCCATAACATCATGACCCTGTCCCCCCTTTTGTAAGACCTTATTTATTGGTGTAGGACCAACATTGGaccatgaatataaaaaaaaagaaa

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-247 Is expressed in several structures, including fin; hypochord; intermediate cell mass of mesoderm; mesoderm; and nervous system.

Ensembl:

ensembl_id ENSDART00000173071

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008230 lncRNA downstream 31007 40637354 ~ 40647206 (-) False XLOC_004326
TCONS_00008862 lncRNA downstream 215726 40460851 ~ 40462487 (-) True XLOC_004323
TCONS_00008214 lncRNA downstream 1032903 39637740 ~ 39645310 (-) True XLOC_004313
TCONS_00008861 lncRNA downstream 1373050 39303597 ~ 39305163 (-) True XLOC_004312
TCONS_00008489 lncRNA downstream 1465448 39208184 ~ 39212765 (-) True XLOC_004311
TCONS_00008240 lncRNA upstream 64582 40760718 ~ 40761318 (-) True XLOC_004330
TCONS_00008241 lncRNA upstream 162518 40858654 ~ 40860470 (-) True XLOC_004331
TCONS_00008242 lncRNA upstream 197630 40893766 ~ 40895245 (-) True XLOC_004332
TCONS_00008490 lncRNA upstream 252753 40948889 ~ 40949818 (-) True XLOC_004333
TCONS_00008247 lncRNA upstream 496193 41192329 ~ 41201272 (-) True XLOC_004336
TCONS_00008228 mRNA downstream 30976 40622310 ~ 40647237 (-) False XLOC_004326
TCONS_00008229 mRNA downstream 31019 40622828 ~ 40647194 (-) False XLOC_004326
TCONS_00008231 mRNA downstream 31023 40637554 ~ 40647190 (-) True XLOC_004326
TCONS_00008227 mRNA downstream 158327 40505044 ~ 40519886 (-) True XLOC_004325
TCONS_00008226 mRNA downstream 174043 40467618 ~ 40504170 (-) True XLOC_004324
TCONS_00008237 mRNA upstream 17587 40713723 ~ 40728380 (-) True XLOC_004328
TCONS_00008238 mRNA upstream 35466 40731602 ~ 40742424 (-) False XLOC_004329
TCONS_00008239 mRNA upstream 35466 40731602 ~ 40742507 (-) True XLOC_004329
TCONS_00008243 mRNA upstream 382055 41078191 ~ 41084358 (-) False XLOC_004334
TCONS_00008245 mRNA upstream 414261 41110397 ~ 41132296 (-) False XLOC_004335
TCONS_00008222 other downstream 495417 40182681 ~ 40182796 (-) True XLOC_004319
TCONS_00008210 other downstream 1588222 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008207 other downstream 1728462 38947987 ~ 38949751 (-) True XLOC_004305
TCONS_00008194 other downstream 2503063 38175071 ~ 38175150 (-) True XLOC_004294
TCONS_00008174 other downstream 3378728 37299371 ~ 37299485 (-) True XLOC_004279
TCONS_00008244 other upstream 382055 41078191 ~ 41084363 (-) True XLOC_004334
TCONS_00008250 other upstream 678875 41375011 ~ 41375126 (-) True XLOC_004339
TCONS_00008295 other upstream 3427191 44123327 ~ 44123458 (-) True XLOC_004381
TCONS_00008303 other upstream 3641021 44337157 ~ 44339220 (-) True XLOC_004385
TCONS_00008317 other upstream 3910715 44606851 ~ 44613734 (-) False XLOC_004396

Expression Profile

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