RNA id: TCONS_00008862


Basic Information

Item Value
RNA id TCONS_00008862
length 1424
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id XLOC_004323
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 40460851 ~ 40462487 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGGAAATGGTCATGACTCAAATATGGTCATTGTTATAGTTATTGTTATCATTTCTGGTGTGAACAGACATGGGCTAACCCAACAGCTGGGTTAAAAAAAGAATCTAAattgaatgtaaaaataaattaaaccagtcttaggtttgtccatatttgggttagatttagattaatacaacccagcattatttagagcagtgtttctcaaccacgttcctggaggtccaCCAGCACTTCATGtattggatgtctcctttgtctgttacacccatcacaggtctttcagtctccgctaatgagctgatgatctgaatcaggtgtgcttGATCTGAATCAAGAAGACATGGAAATGTGCAGAGTtggtgctcctccaggaacgtggtttaGAAGCACTGATTTAGAGTGATGGGTTTTGGAAACAGTCATGACACAAATATggttaatgttatatttattgttatcattTCTGGTGTGAACAGACTTATGGGCTAACCCAACAGCTgggttaaaaatgtcatttaaattgaatgtaaaaaaattaacccaTTTTTAGGTTTGCCCTTATTTGGGTTAGGGTTtgggttattttaataaattcccAACTTTCTAGCGTGATGTGGGACACTTTTGGAAAAGGTCATGACACATATGGTCAGTGTTATGTTTATTGTTATCACTTCTGGTGTGAACAGACCTATAGGCTAACCCAACAGCTgggttaaaaatgtcatttaaattgaatGTTAAAAAATTAACCCATTTTTAGGTGTGCCCTTATTTGGGTTTGGGTTATGTTAATACAGCCCACACTTTCTAAAGTGACGTGGAACACTTGTGGAAATGGTCATGACTCAAATATGGTCATTGTTATAGTTATTGTGATCATTTCTGGTGTGAACAGACATGGGCTAACCCAACAGCTGGGTtaaaaaaacaatctaaattgaatgtaaaaataaattaaaccagtcttaggtttgtccatatttggatAAGGTTTAGATTAATACAACCCAGCAttatttagagcagtgtttctcaaccacgttcctggaggtccaCCAGCACTTCATGtattggatgtctcctttgtctgttacacccatcacaggtctttcagtctccgctaatgagctgatgatctgaatcaggtgtgcttGATCTGAATCAAGAAGACATGGAAATGTGCAGAGTtggtgctcctccaggaacgtggtttaGAAGCACTGATTTAGAGTGATGGGTTTTGGAAACAGTCATGACACAAATATGGTTATTGTTAAATTCATTGTTATCATTTCTGGTGTGAACAGACTTATGGGCTAACCTAACAGCTgggttaaaaatgtcatttaaattgaattttaaaaattaaccCATTTTTAGGTGTGCCCTTATTTGGGTTTGGGTTATGTTAATACAAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008214 lncRNA downstream 815541 39637740 ~ 39645310 (-) True XLOC_004313
TCONS_00008861 lncRNA downstream 1155688 39303597 ~ 39305163 (-) True XLOC_004312
TCONS_00008489 lncRNA downstream 1248086 39208184 ~ 39212765 (-) True XLOC_004311
TCONS_00008196 lncRNA downstream 1986498 38471808 ~ 38474353 (-) False XLOC_004296
TCONS_00008860 lncRNA downstream 2035048 38339439 ~ 38425803 (-) True XLOC_004295
TCONS_00008230 lncRNA upstream 174867 40637354 ~ 40647206 (-) False XLOC_004326
TCONS_00008235 lncRNA upstream 215720 40678207 ~ 40678766 (-) False XLOC_004327
TCONS_00008240 lncRNA upstream 298231 40760718 ~ 40761318 (-) True XLOC_004330
TCONS_00008241 lncRNA upstream 396167 40858654 ~ 40860470 (-) True XLOC_004331
TCONS_00008242 lncRNA upstream 431279 40893766 ~ 40895245 (-) True XLOC_004332
TCONS_00008225 mRNA downstream 3526 40431629 ~ 40457325 (-) True XLOC_004322
TCONS_00008224 mRNA downstream 41876 40331791 ~ 40418975 (-) True XLOC_004321
TCONS_00008223 mRNA downstream 203626 40227753 ~ 40257225 (-) True XLOC_004320
TCONS_00008221 mRNA downstream 256230 40175161 ~ 40204621 (-) True XLOC_004318
TCONS_00008220 mRNA downstream 288556 40134997 ~ 40172295 (-) True XLOC_004317
TCONS_00008226 mRNA upstream 5131 40467618 ~ 40504170 (-) True XLOC_004324
TCONS_00008227 mRNA upstream 42557 40505044 ~ 40519886 (-) True XLOC_004325
TCONS_00008228 mRNA upstream 159823 40622310 ~ 40647237 (-) False XLOC_004326
TCONS_00008229 mRNA upstream 160341 40622828 ~ 40647194 (-) False XLOC_004326
TCONS_00008231 mRNA upstream 175067 40637554 ~ 40647190 (-) True XLOC_004326
TCONS_00008222 other downstream 278055 40182681 ~ 40182796 (-) True XLOC_004319
TCONS_00008210 other downstream 1370860 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008207 other downstream 1511100 38947987 ~ 38949751 (-) True XLOC_004305
TCONS_00008194 other downstream 2285701 38175071 ~ 38175150 (-) True XLOC_004294
TCONS_00008174 other downstream 3161366 37299371 ~ 37299485 (-) True XLOC_004279
TCONS_00008236 other upstream 215726 40678213 ~ 40696136 (-) True XLOC_004327
TCONS_00008244 other upstream 615704 41078191 ~ 41084363 (-) True XLOC_004334
TCONS_00008250 other upstream 912524 41375011 ~ 41375126 (-) True XLOC_004339
TCONS_00008295 other upstream 3660840 44123327 ~ 44123458 (-) True XLOC_004381
TCONS_00008303 other upstream 3874670 44337157 ~ 44339220 (-) True XLOC_004385

Expression Profile

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