XLOC_004317 (EMP3)


Basic Information

Item Value
gene id XLOC_004317
gene name EMP3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 40134856 ~ 40172295 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008218
CTGGACACAAACTCTGGTCTGTTTTTAGTTTGTAGAAGCTGGAAGAAGGAAACTCCTCCTCTAACCGAGCCTGCATTCCTCCCCGGACCCATTTTTTCTAGAAATGTGGGAGactgtggagagagagagagagagtgtgtgtgtgtgtttgggtgtgtgtagAGGAGGAGAAGGGAGTAGACAAGCTTAAGACTCAGAAGAGCAACACAAGACTTCAGACGAAagttttctaaagaaaaaaaaaatttgttggtACGAGCACATACGGATCCTCCAGAATGGCGTTTCTGTTGATGTCTGTGACGGTTCTGCATCTGATCACTCTAGCCATGCTCTTCATCGCCACCATGGAGAAGTCATGGTGGACTTTGGGAGACATCCAGAACACAGATCTGTGGTATAAATGTTCGTATGATAACTCTTCAGGAACCTGGTTATGTGCGTCTGTCAATGAGAGCGAATGGCTGCAGTCGGTGCAGGCGCTGATGATCTTGTCTGTGATCCTGTCCTCCATCTCCTTCATGGTGTTTCTGGGTCAGCTCTTCACCATGTCTAAAGGAGGACTCTTCTACTTCACAGGCCTCTGTCAGCTTTTTGCAGGTTTTGCAGCATTTGCGGCTGTCCTCATCTACACCTTTCAGAAGAGGGAGATTCTTCAAAATGACACTGAACTGGAAAAGGGCCGTTTCGGCTACTGTTATATCCTGGCCTGGGTGTGTGTGCCACTTTTACTAGTCAGTGGTGCACTTTATGTGCATCTGCGCAAACGGGCCTGATTTTCAACACCACACATCAGTAGTTTCATCTGCTGTGAGATTATATATGCTTACAGCGGTTTCAGGTgatatgttattttttaaagtgctttattattatcttattagtgttattttaataaacaaactcTTAATATCTGC
>TCONS_00008219
AATGCAGATCTGTTTGTCCAGGTCTTTTATTTGTTCGTCTCGCCGGTTTGTCTCTCTCAGTTCTTGTTTGGTGGTGTTGAGGATCTTCTGGATGCTCTGCAGCTCCTCAATCATACTCTTCTGCTCGTCTGCATCTTTCTGAAGCTGGATCTCCTGAGACTGAGGGAAAAGCATGGAAACCTCAGGATCCTCCAGAATGGCGTTTCTGTTGATGTCTGTGACGGTTCTGCATCTGATCACTCTAGCCATGCTCTTCATCGCCACCATGGAGAAGTCATGGTGGACTTTGGGAGACATCCAGAACACAGATCTGTGGTATAAATGTTCGTATGATAACTCTTCAGGAACCTGGTTATGTGCGTCTGTCAATGAGAGCGAATGGCTGCAGTCGGTGCAGGCGCTGATGATCTTGTCTGTGATCCTGTCCTCCATCTCCTTCATGGTGTTTCTGGGTCAGCTCTTCACCATGTCTAAAGGAGGACTCTTCTACTTCACAGGCCTCTGTCAGCTTTTTGCAGGTTTTGCAGCATTTGCGGCTGTCCTCATCTACACCTTTCAGAAGAGGGAGATTCTTCAAAATGACACTGAACTGGAAAAGGGCCGTTTCGGCTACTGTTATATCCTGGCCTGGGTGTGTGTGCCACTTTTACTAGTCAGTGGTGCACTTTATGTGCATCTGCGCAAACGGGCCTGA
>TCONS_00008220
ACTGAACTGAAATATAACTAATACAGCCCTTTTGCAGCTCCCAAGTACAACACATGATGGCACTCTTGcaatatgaaacaaaaaacaGCTGCAACAAAATGTAAATGATGTCATTCTTACACATATAATAGATACATAATAAAGAAATCTTAATTTTAGGCTGTTGGGGAATCACACAACCTACAGCTAGTTTCAGgcttgaaaatataattataataaaacactCTATTTAATGCTTTAATTACTATTGAAACCAAATGGTGCAAATGGCATGATTAAAAACAAATCCATAAGAACAAATAGACAGCCTCGTGCCTATATATTTCCTTTTAAAAGTGTGATTAACAATGAAAAGTCGAATACAGGCTTGATTATGGGCTAATGTGCAGGCAAACTCAGAATATAGCTCAGGATTCTAACTGTAAAACTCGGAATTGAGTCTtcataactcagaattctgatgttataatatttattatatatttatttattattcagtgGCGGGAAAGGGCCTCCATGGGTATCTACCGCCTCAATGACAGGCAAACAaattttagttcagtagaaaacttgGCCCTCTTCATGTTATAAGGATCATGtccaacatatgtggttattttatctttacatctcctttgaaatatggtataaatcgcaAAATACGACTTTCCTATACCCCCCTTACTTCCTGTGCTTCATCTGAATTTCGCGGGTCAACATGTGAACCACGTGATTGCAAAAGGTTCCTGGAGTGACGTCAGCGCGCAGGGGGGTATAAAAACGCACACCAGCCTTCACTCAGTTTGCCAGTTTCTAATTTGTAGCGTGTTGTGTTAATGacaacaaacaaccaaacaaacgcaCCAAACACCCACAGAATTCTCACCGTTTACCTCCAAAGTCAGTTTTTGGGCTGAATCTGGACACATCTGAATCCACAAAATCACACCAGGAGTTTGAAACCCATCAGTAAAGATGTTTACAAAAGGATCCTCCAGAATGGCGTTTCTGTTGATGTCTGTGACGGTTCTGCATCTGATCACTCTAGCCATGCTCTTCATCGCCACCATGGAGAAGTCATGGTGGACTTTGGGAGACATCCAGAACACAGATCTGTGGTATAAATGTTCGTATGATAACTCTTCAGGAACCTGGTTATGTGCGTCTGTCAATGAGAGCGAATGGCTGCAGTCGGTGCAGGCGCTGATGATCTTGTCTGTGATCCTGTCCTCCATCTCCTTCATGGTGTTTCTGGGTCAGCTCTTCACCATGTCTAAAGGAGGACTCTTCTACTTCACAGGCCTCTGTCAGCTTTTTGCAGGTTTTGCAGCATTTGCGGCTGTCCTCATCTACACCTTTCAGAAGAGGGAGATTCTTCAAAATGACACTGAACTGGAAAAGGGCCGTTTCGGCTACTGTTATATCCTGGCCTGGGTGTGTGTGCCACTTTTACTAGTCAGTGGTGCACTTTATGTGCATCTGCGCAAACGGGCCTGA

Function

symbol description
emp3 Involved in bleb assembly and cell death. Located in plasma membrane.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000036428

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008218 False 917 mRNA 0.44 5 40134856 40147032
TCONS_00008219 False 694 mRNA 0.48 6 40134997 40165683
TCONS_00008220 True 1497 mRNA 0.41 5 40134997 40172295

Neighbor

gene id symbol gene type direction distance location
XLOC_004316 fam83e coding downstream 6134 40103720 ~ 40128722 (-)
XLOC_004315 tnfrsf9b coding downstream 33610 40088141 ~ 40101246 (-)
XLOC_004314 uts2b coding downstream 104717 40024182 ~ 40030139 (-)
XLOC_004313 CR847998.1 coding downstream 489546 39637740 ~ 39645310 (-)
XLOC_004312 NA coding downstream 829693 39303597 ~ 39305163 (-)
XLOC_004318 znf362a coding upstream 2866 40175161 ~ 40204621 (-)
XLOC_004319 CT033813.1 coding upstream 10386 40182681 ~ 40182796 (-)
XLOC_004320 trim62.2 coding upstream 55458 40227753 ~ 40257225 (-)
XLOC_004321 trim62.1 coding upstream 159496 40331791 ~ 40418975 (-)
XLOC_004322 tnfrsf1b coding upstream 259334 40431629 ~ 40457325 (-)
XLOC_004063 CR854846.1 misc downstream 24007178 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 27443165 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 27513089 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 27543560 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 27621594 12512966 ~ 12513262 (-)
XLOC_004311 NA non-coding downstream 922091 39208184 ~ 39212765 (-)
XLOC_004308 CU210919.2 non-coding downstream 1044865 39089875 ~ 39089991 (-)
XLOC_004305 AL845324.2 non-coding downstream 1185105 38947987 ~ 38949751 (-)
XLOC_004323 NA non-coding upstream 288556 40460851 ~ 40462487 (-)
XLOC_004330 FP236327.1 non-coding upstream 588423 40760718 ~ 40761318 (-)
XLOC_004331 CABZ01083815.1 non-coding upstream 686359 40858654 ~ 40860470 (-)
XLOC_004332 CABZ01044765.1 non-coding upstream 721471 40893766 ~ 40895245 (-)

Expression


Co-expression Network