XLOC_004320 (trim62.2)


Basic Information

Item Value
gene id XLOC_004320
gene name trim62.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 40227753 ~ 40257225 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008223
TACAGAGGGAGATGAAGGAGCAGCTGGCGACTCTACAGGACAGTGAGAAGGGTCATACGGAGGCTTTACAGCTACTGCAGAGGCAGCTCACTGAAACCAAGTCATCAGCAAAGAGTCTTCGTGCCACGATTGGCGAGGCATTTGAGCGACTTCAGCGTTTTCTCCGGGAGCGGCAGAAGAGCATGCTGGAGGAACTGGAGGCGGATACGGCGCGAACACTCACTGACATAGAACACAAGATCCAGCGCTACAGCCAGCAGCTCCGCGACGTTAAAGAGGGCATCCAGATCCTGCAGGAGCGACTCAGTGAAACTAGCCGTCACGAATTCCTGGAGGGAATCGCCCTGACGTCGGACAGAATAAAGGGAAAAATCCACGAAACCAACCTCACCTATGAAGACTTCCCCACATCCAAGTACATGGGGCCCTTACAGTATACGATCTGGAAGTCTCTTTTCTTGGATATTTCACCAGTGCCTGCTGCATTAACCATGGACCCCAGCACTGCTCACCAGCGGCTCATCTTATCAGACGACTGCACCATCGTGGCGTATGGCAACCTGCACCCACAGCCCTTGCAGGATTCACCGCGCCGATTCGACGTGGAGGTGTCCGTTCTGGGCGATGAAGGCTTCTCCGGAGGCGTCCACTACTGGGAGGTAATGGTGTCCGAAAAAACCCAGTGGATGATTGGTGTGGCCAACGAAACGGTCAACCGCAAGGGCAGCATTCAAATTCAGCCCAGCCGAGGCTTCTACTGCATCGTGATGCATGACGGTAATCAATACAGCGCATGCACAGAGCCCTGGACGCGCCTCAACGTCAAGAGCAAACTGGAAAAAGTGGGCGTCTACTTAGACTATCCTAAAGGCTTGCTGGTTTTCTACAACGCTGACGACATGTCCTGGCTGTACACGTACAGAGAGAAGTTTCCAGCCAAACTCTTCCCATACTTCAGCCCCGGTCAAAGTCACGCCAACGGCAAAAACGTGCAGCCCTTGCGAATAAACACAGTGCGTTTATAAAAGCCGATTCAGCACAAAGGTTTTAAGGAaggaaactgcaaaaaaaaaaaaacctagggTGTATGATACAGTTTCTTTCTTTCGGGCATGGACATGAAGCCATCTGACTGATGGATTGTGACGTGAAGCTCCGCCGGTTGCTAAATAAATTGGAGAGCTTTGCACTTTTCTGA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-141216-17 No description available

Ensembl:

ensembl_id ENSDARG00000095536

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008223 True 1198 mRNA 0.52 4 40227753 40257225

Neighbor

gene id symbol gene type direction distance location
XLOC_004318 znf362a coding downstream 23132 40175161 ~ 40204621 (-)
XLOC_004319 CT033813.1 coding downstream 44957 40182681 ~ 40182796 (-)
XLOC_004317 EMP3 coding downstream 55458 40134856 ~ 40172295 (-)
XLOC_004316 fam83e coding downstream 99031 40103720 ~ 40128722 (-)
XLOC_004315 tnfrsf9b coding downstream 126507 40088141 ~ 40101246 (-)
XLOC_004321 trim62.1 coding upstream 74566 40331791 ~ 40418975 (-)
XLOC_004322 tnfrsf1b coding upstream 174404 40431629 ~ 40457325 (-)
XLOC_004323 NA coding upstream 203626 40460851 ~ 40462487 (-)
XLOC_004324 si:dkeyp-61b2.1 coding upstream 210393 40467618 ~ 40504170 (-)
XLOC_004325 miip coding upstream 247819 40505044 ~ 40519886 (-)
XLOC_004063 CR854846.1 misc downstream 24100075 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 27536062 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 27605986 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 27636457 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 27714491 12512966 ~ 12513262 (-)
XLOC_004313 CR847998.1 non-coding downstream 582443 39637740 ~ 39645310 (-)
XLOC_004312 NA non-coding downstream 922590 39303597 ~ 39305163 (-)
XLOC_004311 NA non-coding downstream 1014988 39208184 ~ 39212765 (-)
XLOC_004308 CU210919.2 non-coding downstream 1137762 39089875 ~ 39089991 (-)
XLOC_004330 FP236327.1 non-coding upstream 503493 40760718 ~ 40761318 (-)
XLOC_004331 CABZ01083815.1 non-coding upstream 601429 40858654 ~ 40860470 (-)
XLOC_004332 CABZ01044765.1 non-coding upstream 636541 40893766 ~ 40895245 (-)
XLOC_004333 NA non-coding upstream 691664 40948889 ~ 40949818 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_11217445_11231205 ERMAP, TRIM62 coding CI01000306 null 11217252 ~ 11231213 (-)
bowfin (Amia calva) AMCG00002047 trim62,LOC107756651 coding CM030136.1 CM030136.1 1802786 ~ 1809281 (+)