RNA id: TCONS_00008224


Basic Information

Item Value
RNA id TCONS_00008224
length 1876
RNA type mRNA
GC content 0.52
exon number 6
gene id XLOC_004321
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 40331791 ~ 40418975 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATTGTGAAGAGCTGCGCGTGCGGTCGGTCGGTCGCTTCAGCTTTTGAAGGGTCTGACGTGATGAAAATGTTGAATTAAAACCACGACCCGCTCTCCTAATTATGTGACAGTCGGCTGCTTCCAGTGTACAACGCGCCAGGACCGTTTTGGAAAATTTCATCGGAGTCATTTTCAAGCCTCGCAGAGCACACTAGGAAGCCCAGCTGCTTAAGAGGCTCAGGGTTTGTGCATCCCGCCACCTGCACAGTGCATGACCGACTCCTCCATAGATTCAAATGGCTAGCTATCTGAAGGACGAGCTCTTGTGTTCTATTTGTCTGAGCATTTATCAAGACCCTGTGAGTTTCGGTTGCGAGCACTACTTTTGCCGTAAGTGCATCACTGAACACTGGAGCAGACAGGAGCATCACGGGACACGAGACTGCCCAGAGTGCAGGAGGACCTTCACGGATCCCCTTCTATCGCCGAGCCTCAAGCTCTCCAACATCGTGGAGAGGTACACCGCTTTCCCCCTGGACGCCATCCTCAATGCTCAGAGGAACTCGTATCCGTGCAAAGACCATGAAAAGGTCAAGCTCTTCTGCTTAAGTGACAAGAGCCTGGTGTGCTTCTTCTGTGATGAGCCTGCATTACACGAACAGCATCAAGTCACCACGGTTGACGAGGCCTATGAGGAGATACAGAGGGAGATGAAGGAGCAGCTGGCGACTCTTCAGGACAGTGAGAAGGGTCATACGGAGGCTTTACAACTACTGCAGAGGCAGCTTACTGAAACCAAGTCATCAGCAAAGAGTCTTCGTGCCACGATTGGCGAGGCATTTGAGCGACTTCAGCGTTTTCTCCGGGAGCGGCAGAAGAGCATGCTAGAGGAACTGGAGGCGGATACGGCGCGAACACTCACTGACATTGAACACAAGATCCAGCGCTACAGCCAGCAGCTCCGCGACGTTAAAGAGGGCATCCAGATCCTGCAGGAGCGACTCAGTGAAACTAGCCGTCACGAATTCCTGGAGGGAATCGCCCTGACGTCGGACAGAATAAAGGGAAAAATCCACGAAACCAACCTCACCTATGAAGACTTCCCCACATCCAAGTACATGGGGCCCTTACAGTATACGATCTGGAAGTCTCTTTTCTTGGATATTTCACCAGTGCCTGCTGCATTAACCATGGACCCCAGCACTGCTCACCAGCGGCTCATCTTATCAGACGACTGCACCATCGTGGCGTATGGCAACCTGCACCCGCAGCCCTTGCAGGATTCACCGCGCCGATTCGACGTAGAGGTGTCCGTTCTGGGCGATGAAGGCTTCTCCGGAGGTGTCCACTACTGGGAGGTAATGGTGTCCGAAAAAACCCAGTGGATGATTGGTGTGGCCAACGAAACGGTCAACCGCAAGGGCAGCATTCAAATCCAGCCCGGCCGAGGCTTCTACTGCATCGTGATGCATGACGGTAATCAATACAGCGCATGCACAGAGCCCTGGACGCGCCTCAACGTCAAGAGCAAACTGGAAAAAGTGGGCGTCTACTTAGACTATCCTAAAGGCTTGCTGGTTTTCTACAACGCTGACGACATGTCCTGGCTGTACACGTACAGAGAGAAGTTTCCAGCCAAACTCTTCCCATACTTCAGCCCCGGTCAAAGTCACGCCAACGGCAAAAACGTGCAGCCCTTGCGAATAAACACAGTGCGTTTATAAAAGCCGATTCAGCACAGAGGTTTTAAGGAaggaaactgcaaaaaaaaaaacctagggTGTATGATAAAGTTTCTTTCTTTCGGGCATGGACATGAAGCCATCTGACTGATGGATTGTGACGTGAAGCTCCGCCGGTTGCTAAATAAATTGGAGAGCTTTGCACTTTTCTGAG

Function

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling biological_process
GO:0016567 protein ubiquitination biological_process
GO:0051092 positive regulation of NF-kappaB transcription factor activity biological_process
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-502 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in several processes, including positive regulation of I-kappaB kinase/NF-kappaB signaling; positive regulation of NF-kappaB transcription factor activity; and protein ubiquitination. Predicted to be active in cytoplasm. Orthologous to human TRIM62 (tripartite motif containing 62).

Ensembl:

ensembl_id ENSDART00000086296

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008214 lncRNA downstream 686481 39637740 ~ 39645310 (-) True XLOC_004313
TCONS_00008861 lncRNA downstream 1026628 39303597 ~ 39305163 (-) True XLOC_004312
TCONS_00008489 lncRNA downstream 1119026 39208184 ~ 39212765 (-) True XLOC_004311
TCONS_00008196 lncRNA downstream 1857438 38471808 ~ 38474353 (-) False XLOC_004296
TCONS_00008860 lncRNA downstream 1905988 38339439 ~ 38425803 (-) True XLOC_004295
TCONS_00008862 lncRNA upstream 41876 40460851 ~ 40462487 (-) True XLOC_004323
TCONS_00008230 lncRNA upstream 218379 40637354 ~ 40647206 (-) False XLOC_004326
TCONS_00008235 lncRNA upstream 259232 40678207 ~ 40678766 (-) False XLOC_004327
TCONS_00008240 lncRNA upstream 341743 40760718 ~ 40761318 (-) True XLOC_004330
TCONS_00008241 lncRNA upstream 439679 40858654 ~ 40860470 (-) True XLOC_004331
TCONS_00008223 mRNA downstream 74566 40227753 ~ 40257225 (-) True XLOC_004320
TCONS_00008221 mRNA downstream 127170 40175161 ~ 40204621 (-) True XLOC_004318
TCONS_00008220 mRNA downstream 159496 40134997 ~ 40172295 (-) True XLOC_004317
TCONS_00008219 mRNA downstream 166108 40134997 ~ 40165683 (-) False XLOC_004317
TCONS_00008218 mRNA downstream 184759 40134856 ~ 40147032 (-) False XLOC_004317
TCONS_00008225 mRNA upstream 12654 40431629 ~ 40457325 (-) True XLOC_004322
TCONS_00008226 mRNA upstream 48643 40467618 ~ 40504170 (-) True XLOC_004324
TCONS_00008227 mRNA upstream 86069 40505044 ~ 40519886 (-) True XLOC_004325
TCONS_00008228 mRNA upstream 203335 40622310 ~ 40647237 (-) False XLOC_004326
TCONS_00008229 mRNA upstream 203853 40622828 ~ 40647194 (-) False XLOC_004326
TCONS_00008222 other downstream 148995 40182681 ~ 40182796 (-) True XLOC_004319
TCONS_00008210 other downstream 1241800 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008207 other downstream 1382040 38947987 ~ 38949751 (-) True XLOC_004305
TCONS_00008194 other downstream 2156641 38175071 ~ 38175150 (-) True XLOC_004294
TCONS_00008174 other downstream 3032306 37299371 ~ 37299485 (-) True XLOC_004279
TCONS_00008236 other upstream 259238 40678213 ~ 40696136 (-) True XLOC_004327
TCONS_00008244 other upstream 659216 41078191 ~ 41084363 (-) True XLOC_004334
TCONS_00008250 other upstream 956036 41375011 ~ 41375126 (-) True XLOC_004339
TCONS_00008295 other upstream 3704352 44123327 ~ 44123458 (-) True XLOC_004381
TCONS_00008303 other upstream 3918182 44337157 ~ 44339220 (-) True XLOC_004385

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_11255573_11265079.mRNA True 831 mRNA 0.45 3 CI01000306 11255351 ~ 11265145 (-)