RNA id: CI01000306_11255573_11265079.mRNA


Basic Information

Item Value
RNA id CI01000306_11255573_11265079.mRNA
length 831
RNA type mRNA
GC content 0.45
exon number 3
gene id CI01000306_11255573_11265079
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 11255351 ~ 11265145 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAATACACGCCAGCAGAGTGCGAGCAATCACCCTGATATTATCATATATGCTCATTTCTGCCTGTGATGAGGAAGCCGGAGCTGTACCATCAGAGCAGCGGGAGGGATTCACCCTTCATCGGTGTAAAAATGTCTTATATTCTTCACGAATCCAGCCCAGATGATAAACACAAATTAAACATTTATCAAGACCCAGTCAGTTTCGGCTGTGAGCACTACTTCTGTCGTAAGTGCATCACTGAGCATTGGAGCAGACAGGAGCATCACGGCACACGAGACTGCCCGGAGTGCAGGAGGACCTTCACAGATCCCCTTTTATCCCCAAGCCTGAAGCTTTCCAACATTGTGGAGAGGTACGCCGCTTTCCCTCTGGACGCCATCCTAAACGCCCAGAGGAACTCGTACCCATGCAAGGACCATGAAAAGGTCAAGCTCTTCTGCTTAAGTGACAAGAGCTTGGTGTGCTTCTTCTGCGATGAGCCTGCCTTACACGAACAGCACCAAGTCACCACCGTCGACGAGGCCTATGAGGAAATACAGTCTGCTGTTTCCGGCTTCCAGATGTCTCTGGTATTATACGACACTAATTTCAATGAACTAGTGAATTAGTAGATTTCTGGTTTAAAGAAAAAAAAAAATCATACACAGGCGGCACAGATCTGAATCTCCATCAACAAATGACTTACTAAGTCGATAATAGATCACTCTACTTAGACTGAGCCTGTGTTTCAGTGAGAGTATAGAAAGCTCATTGTCTGTACTGAATCAGACTCAAGAGGTCATTTTTTATTTGAAGTGCCACTGTTCAGTGCTTTTATTAGATTTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU501896 lncRNA downstream 71347 11183375 ~ 11184004 (-) True G437269
TU501893 lncRNA downstream 109198 11144777 ~ 11146153 (-) True G437266
TU501873 lncRNA downstream 130070 11124610 ~ 11125281 (-) True G437253
TU501863 lncRNA downstream 193378 11061638 ~ 11061973 (-) True G437247
TU501862 lncRNA downstream 201242 11053713 ~ 11054109 (-) True G437246
TU501910 lncRNA upstream 1345 11266490 ~ 11266804 (-) True G437282
TU501875 lncRNA upstream 7692 11272837 ~ 11274008 (-) True G437255
TU501935 lncRNA upstream 94384 11359529 ~ 11363969 (-) True G437301
CI01000306_11217445_11231205.mRNA mRNA downstream 24138 11217252 ~ 11231213 (-) True CI01000306_11217445_11231205
CI01000306_11196371_11200955.mRNA mRNA downstream 54276 11196038 ~ 11201075 (-) True CI01000306_11196371_11200955
CI01000306_11177715_11179047.mRNA mRNA downstream 76216 11176293 ~ 11179135 (-) True CI01000306_11177715_11179047
CI01000306_11163918_11174225.mRNA mRNA downstream 81126 11163785 ~ 11174225 (-) True CI01000306_11163918_11174225
CI01000306_11156216_11159574.mRNA mRNA downstream 95777 11155407 ~ 11159574 (-) True CI01000306_11156216_11159574
CI01000306_11275128_11288123.mRNA mRNA upstream 9966 11275111 ~ 11288123 (-) True CI01000306_11275128_11288123
CI01000306_11325587_11327002.mRNA mRNA upstream 60066 11325211 ~ 11327246 (-) True CI01000306_11325587_11327002
CI01000306_11376968_11380740.mRNA mRNA upstream 111823 11376968 ~ 11380740 (-) True CI01000306_11376968_11380740
CI01000306_11397382_11399393.mRNA mRNA upstream 131444 11396589 ~ 11399674 (-) True CI01000306_11397382_11399393
CI01000306_11413688_11420833.mRNA mRNA upstream 148519 11413664 ~ 11420833 (-) True CI01000306_11413688_11420833
TU501193 other downstream 1229976 10022148 ~ 10025375 (-) True G436643
TU501173 other downstream 1419028 9835025 ~ 9836323 (-) True G436626
TU500988 other downstream 1583575 9656279 ~ 9671776 (-) True G436446
TU498677 other downstream 4388415 6866656 ~ 6866936 (-) True G434338
TU498395 other downstream 4803100 6437406 ~ 6452251 (-) True G434086

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00008224 True 1876 mRNA 0.52 6 NC_007122.7 40331791 ~ 40418975 (-)