XLOC_004329 (tas1r3)


Basic Information

Item Value
gene id XLOC_004329
gene name tas1r3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 40731602 ~ 40742507 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008238
AGGATGAAGAACAAGTGGACTTTTCTGGTGCTCTGTGGCATTCTGGGGTCTGGACTCGGCGACAACCCATCATGGTTCAACAACATCACTACAAATTTTTTCAAATCTCCTGGAGATATTCTCATTGGAGGACTATTTCCCATCAACCAACTCACAAGTGAACTGAGCCAACGGGTGAAACCTGATGATCTTCAGTGTGACAGCATAAGCACATATGGTCTGTCTCTTTCGCTGGTGATGAAGTTCACTGTGGACGAGATCAACTCTAAAAAGCATATTCTCCCAGGGATCACTCTTGGATTTGAGAGCTATGACACCTGCATGCAGCCAGCCGTTATCATGAAGCCCGTCCTGCAGCTTCTCACACAGGAATCAACAGATGAACTGGACATTTATTGTAACTACACAAACTACAAGCCTCGGGTTATGGCTATCATAGGACCAGACAGCTCAGACGTGGTCCCAGATGCTGGCAAGCTGATTGGTTTTTTCTTGATGCCAATGATTAGTTATGGTGCCACCAGCGATGAGTTCAGTAACAAACAGACCTACCCGTCTTTCATGCGAACCGTCGCCAGCGATCAGTGGCAGGTTGTGGCCATGATACAGCTGCTGAAACAGTTTGGGTGGAACTGGGTGTCAGTAATAGGTAGTGACGAAGAATACGGCCAGATGGGTCAGCAGCAGTTCTCCAGCATGGCCAATGATGAGTCCATCTGCGTGGCCTATCAGGGTTTAATTCCCGTATACAGTGATCCAGGACCTACAATACAAGATATGCTGAATCGGATCGTGGATGCTAAAGTTGGAGTGGTGGTGGTCTTCTCTATTCCCATCCCAGCTAAAGCCTTCTTTAAAGAGGTAATCAAAAGAAACATTACAGCTGTTTGGGTGGCGAGCACAGCATGGAGTCTGAATGATGGTGTATCCACCCTGCCTGGCATCACTTCAATAGGCACCGTGCTGGCGTTTGCAGACATCACCAGACCTCTTGACCTCTTTACTCCCTACATCCGTGAGCTTTTCACCAAAATAGAGGGGATGGCGATCCCACAACAGCTAGATGCAGACATCTCGCCTCTGGACAACCCATGCCCAAGATGCAGCTATGTGAGCCAAGCCAACGTGAGCATGGTAGAGGTAGACCTAGTGCAGCGCTCAGCTTTCAGTGTCTATGCTGCCGTCTACTGTGCCGCATATGCTCTGCATGACTTGCTTGGATGCAATGCAACCAGCTGCACTCGAAATCCTAAAAGAGACAATGTCTATCCATGGCAGCTGTTGCggaaactccaaaaactgtcttTAGACCTTGAGGGGGTCAATATTCAGTTTGATGATGAGGGCAATCCAAACTTTGGCTACGATTTTATGCAGTGGATCTTCAATGACACCACCGTGACCTTTGATGTAATTGGATACTTTTATCAGAACCTTACCATTGAAAGCAATGCTATAAAATGGCACACAAAAAACGGAGAGGTGCCAATGTCCACCTGCTCCTCAGACTGTGGGATAGGACAGGTGCGCAGAGTCAAAGGTTTCCATTCCTGCTGTTTTGACTGTATTGACTGCTTGGAGGGAACATTCCTAAACAACACAGATGACATTCAGTGTAAATCATGTCCCAATGGCCAGTGGTCAACTCTAAGAAGCACAAGCTGTGTCTATCCCATCTACACCTACCTGGACTGGACCAACTATGAGTCAATCGGAGTCATTCTGGGAGGAATTGTAGTGCTTGCATCACATGTATGGGTGGGGGCTCTGTTTTTCAAGCACAGAGGAACTCCACTGGTGAAAACTGCAGGTGGACCGCTGTGTGGCCTTACCTTGCTGAGCCTTGCTGGAGGATGTATGAGTCTGGTGCTGTTCCTGGGTCAGCCGGGAGACACCGTCTGCCGCCTGCAGGAGCCACTTAATGCCTTTTTTCCCACCGTGGCCCTCTCAGTCATTCTGTCCAGTTCCCTTCAGATTGTGTGCGTCACAGAGTTTCCTGAGCAGTCTTCCGAACACCTAGAAAACCTACGCGGACGAGGAAGCTGGTTTGTGATTCTGGGATGTTGCGGGCTGCAAGCGGGACTATGCGGCTGGTATGGCCTAGAAGGTCCCTCCCTGACCCAATACGTCGCCAGTTTGGATGTGACTTATGTGAAAACTTTTCTACGCTGCCCAGTGGAGCCAATGTTAAACTTCGGCCTGATGCTCGGTTTTAATGTCATCCTGGCTCTGATGTCATTCATGTCCACCTTCATGGCTCTAAAGCCACCTGGACAGTACAACTTAGCCAGAGACATCACCATCTCCACCTTGAGTTACTGCGTCATGTGGGTGATGTTCATCCCTATTTACACCAGTCTAGATGATAAAAATAAGTCCCTTGCTCAAGTAGGAGTTAGTTTACTCAGTAATATGGGGTTGGTTGCGGCCTACTTCTTCCCTAAATGCCACCTGCTGGTCAAACAACCAGAACTCAACACAGATGATCACTTTCGTACATTTTTGGAAGGCGTCCCACCGACACCACCTGAAGAAAGCTAA
>TCONS_00008239
ATGCTTCTACTGAGGATGAAGAACAAGTGGACTTTTCTGGTGCTCTGTGGCATTCTGGGGTCTGGACTCGGCGACAACCCATCATGGTTCAACAACATCACTACAAATTTTTTCAAATCTCCTGGAGATATTCTCATTGGAGGACTATTTCCCATCAACCAACTCACAAGTGAACTGAGCCAACGGGTGAAACCTGATGATCTTCAGTGTGACAGCATAAGCACATATGGTCTGTCTCTTTCGCTGGTGATGAAGTTCACTGTGGACGAGATCAACTCTAAAAAGCATATTCTCCCAGGGATCACTCTTGGATTTGAGAGCTATGACACCTGCATGCAGCCAGCCGTTATCATGAAGCCCGTCCTGCAGCTTCTCACACAGGAATCAACAGATGAACTGGACATTTATTGTAACTACACAAACTACAAGCCTCGGGTTATGGCTATCATAGGACCAGACAGCTCAGACGTGGTCCCAGATGCTGGCAAGCTGATTGGTTTTTTCTTGATGCCAATGATTAGTTATGGTGCCACCAGCGATGAGTTCAGTAACAAACAGACCTACCCGTCTTTCATGCGAACCGTCGCCAGCGATCAGTGGCAGGTTGTGGCCATGATACAGCTGCTGAAACAGTTTGGGTGGAACTGGGTGTCAGTAATAGGTAGTGACGAAGAATACGGCCAGATGGGTCAGCAGCAGTTCTCCAGCATGGCCAATGATGAGTCCATCTGCGTGGCCTATCAGGGTTTAATTCCCGTATACAGTGATCCAGGACCTACAATACAAGATATGCTGAATCGGATCGTGGATGCTAAAGTTGGAGTGGTGGTGGTCTTCTCTATTCCCATCCCAGCTAAAGCCTTCTTTAAAGAGGTAATCAAAAGAAACATTACAGCTGTTTGGGTGGCGAGCACAGCATGGAGTCTGAATGATGGTGTATCCACCCTGCCTGGCATCACTTCAATAGGCACCGTGCTGGCGTTTGCAGACATCACCAGACCTCTTGACCTCTTTACTCCCTACATCCGTGAGCTTTTCACCAAAATAGAGGGGATGGCGATCCCACAACAGCTAGATGCAGACATCTCGCCTCTGGACAACCCATGCCCAAGATGCAGCTATGTGAGCCAAGCCAACGTGAGCATGGTAGAGGTAGACCTAGTGCAGCGCTCAGCTTTCAGTGTCTATGCTGCCGTCTACTGTGCCGCATATGCTCTGCATGACTTGCTTGGATGCAATGCAACCAGCTGCACTCGAAATCCTAAAAGAGACAATGTCTATCCATGGCAGCTGTTGCggaaactccaaaaactgtcttTAGACCTTGAGGGGGTCAATATTCAGTTTGATGATGAGGGCAATCCAAACTTTGGCTACGATTTTATGCAGTGGATCTTCAATGACACCACCGTGACCTTTGATGTAATTGGATACTTTTATCAGAACCTTACCATTGAAAGCAATGCTATAAAATGGCACACAAAAAACGGAGAGGTGCCAATGTCCACCTGCTCCTCAGACTGTGGGATAGGACAGGTGCGCAGAGTCAAAGGTTTCCATTCCTGCTGTTTTGACTGTATTGACTGCTTGGAGGGAACATTCCTAAACAACACAGATGACATTCAGTGTAAATCATGTCCCAATGGCCAGTGGTCAACTCTAAGAAGCACAAGCTGTGTCTATCCCATCTACACCTACCTGGACTGGACCAACTATGAGTCAATCGGAGTCATTCTGGGAGGAATTGTAGTGCTTGCATCACATGTATGGGTGGGGGCTCTGTTTTTCAAGCACAGAGGAACTCCACTGGTGAAAACTGCAGGTGGACCGCTGTGTGGCCTTACCTTGCTGAGCCTTGCTGGAGGATGTATGAGTCTGGTGCTGTTCCTGGGTCAGCCGGGAGACACCGTCTGCCGCCTGCAGGAGCCACTTAATGCCTTTTTTCCCACCGTGGCCCTCTCAGTCATTCTGTCCAGTTCCCTTCAGATTGTGTGCGTCACAGAGTTTCCTGAGCAGTCTTCCGAACACCTAGAAAACCTACGCGGACGAGGAAGCTGGTTTGTGATTCTGGGATGTTGCGGGCTGCAAGCGGGACTATGCGGCTGGTATGGCCTAGAAGGTCCCTCCCTGACCCAATACGTCGCCAGTTTGGATGTGACTTATGTGAAAACTTTTCTACGCTGCCCAGTGGAGCCAATGTTAAACTTCGGCCTGATGCTCGGTTTTAATGTCATCCTGGCTCTGATGTCATTCATGTCCACCTTCATGGCTCTAAAGCCACCTGGACAGTACAACTTAGCCAGAGACATCACCATCTCCACCTTGAGTTACTGCGTCATGTGGGTGATGTTCATCCCTATTTACACCAGTCTAGATGATAAAAATAAGTCCCTTGCTCAAGTAGGAGTTAGTTTACTCAGTAATATGGGGTTGGTTGCGGCCTACTTCTTCCCTAAATGCCACCTGCTGGTCAAACAACCAGAACTCAACACAGATGATCACTTTCGTACATTTTTGGAAGGCGTCCCACCGACACCACCTGAAGAAAGCTAA

Function

symbol description
tas1r3 Predicted to enable G protein-coupled receptor activity. Predicted to be involved in sensory perception of sweet taste and sensory perception of umami taste. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in gill raker; mouth; and pharynx. Orthologous to human TAS1R3 (taste 1 receptor member 3).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050916 sensory perception of sweet taste biological_process
GO:0050917 sensory perception of umami taste biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
ko04973 Carbohydrate digestion and absorption
ko04742 Taste transduction
ko04030 G protein-coupled receptors

ZFIN:

id description
ZDB-GENE-070917-3 Predicted to enable G protein-coupled receptor activity. Predicted to be involved in sensory perception of sweet taste and sensory perception of umami taste. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in gill raker; mouth; and pharynx. Orthologous to human TAS1R3 (taste 1 receptor member 3).

Ensembl:

ensembl_id ENSDARG00000006341

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008238 False 2541 mRNA 0.48 8 40731602 40742424
TCONS_00008239 True 2553 mRNA 0.48 9 40731602 40742507

Neighbor

gene id symbol gene type direction distance location
XLOC_004328 ccdc114 coding downstream 3222 40713723 ~ 40728380 (-)
XLOC_004327 si:ch211-222l21.1 coding downstream 35466 40677616 ~ 40696136 (-)
XLOC_004326 prxl2b coding downstream 84365 40622310 ~ 40647237 (-)
XLOC_004325 miip coding downstream 211716 40505044 ~ 40519886 (-)
XLOC_004324 si:dkeyp-61b2.1 coding downstream 227432 40467618 ~ 40504170 (-)
XLOC_004330 FP236327.1 coding upstream 18211 40760718 ~ 40761318 (-)
XLOC_004331 CABZ01083815.1 coding upstream 116147 40858654 ~ 40860470 (-)
XLOC_004332 CABZ01044765.1 coding upstream 151259 40893766 ~ 40895245 (-)
XLOC_004333 NA coding upstream 206382 40948889 ~ 40949818 (-)
XLOC_004334 zgc:175088 coding upstream 335684 41078191 ~ 41084363 (-)
XLOC_004063 CR854846.1 misc downstream 24603924 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 28039911 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 28109835 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 28140306 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 28218340 12512966 ~ 12513262 (-)
XLOC_004323 NA non-coding downstream 269115 40460851 ~ 40462487 (-)
XLOC_004319 CT033813.1 non-coding downstream 548806 40182681 ~ 40182796 (-)
XLOC_004313 CR847998.1 non-coding downstream 1086292 39637740 ~ 39645310 (-)
XLOC_004312 NA non-coding downstream 1426439 39303597 ~ 39305163 (-)
XLOC_004311 NA non-coding downstream 1518837 39208184 ~ 39212765 (-)
XLOC_004336 CABZ01087025.3 non-coding upstream 449822 41192329 ~ 41201272 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_11423543_11430967 TAS1R3 coding CI01000306 null 11422464 ~ 11430967 (-)