RNA id: TCONS_00008305


Basic Information

Item Value
RNA id TCONS_00008305
length 1407
RNA type mRNA
GC content 0.57
exon number 6
gene id XLOC_004388
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 44400864 ~ 44409856 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cttgcagCGCCGCTGACAGACAAACCACCCAAAATCCTGCAGCCGCCGGAACACAAGCTGAGCGTGATGGAGCTGCAGCTGGgtGGGCCGGTGAACCTGACCTGCCGAGCGTTCTTCGGCTACAGCGGTGACGTCAGTCCGCTCATCTACTGGATGAAGGGAGAGAAGTTCATCGAGGATCTGGACGAAACCCGCATCCGAGAGAGCGAAATCAAGATGGTTCGAGAGCACCTGGGTGAGCAGGAGGTTTCGGTTTCTCTGACAATCGACAGCCTGCAGGAGGAAGACCTGGGCAACTACAGCTGCTATGTGGAGAACGGACACGGCAGACGACACGCCATTATCCAGCTCAGCAGGAgggagCTGATGTATACAGTGGAGCTGGCTGGAGGTTTGGGAGCCATTCTGTTGATGTTGATATTTTTGGTGTCCCTCTATAAGTGTTACAGAATTGAACTCATGCTCTTCTACAGAAATCACTTCGGCAGTGAGGATGTGGATGGAGAAAATAAAGATTATGATGCTTACGTGTCCTACACTAAAGTGGACCCGGACCAGTGGAGTCAGGAAAGCCGAGAGGAAGAACACTTTGCTCTGGAGATTCTGCCAGACATGCTGGAAAAGCATTATGGGTATAAACTCTTCATTCCTGACAGGGACTTGATCCCGACCGGAACCTACATTGAGGATGTGGCCCGCTGTGTGGACCAGAGCAAACGCCTCATCATCGTGATGACGCCAAACTATGTGGTGCGGCGCGGCTGGAGCATCTTTGAGCTGGAGACACGGCTGCGCAACATGCTGGTGTCCGGCGAGATCAAGGTGATCCTCATCGAGTGCTCTGACCTGCGGGGCATCATGAACTACCAGGAGGTGGAGGCTCTGAAACACACCATCAAGCTCTTGACGGTCATTCGCTGGCCGGGCCCCGGAAGCAGCAAGCCCAACTCCCGCTTCTGGAAGCAGCTGCAGTATGAGATGCCCTTCCGGCGGCCCGAGCCCAAGCTGAGTCACGAGCAGGTGCTGGACGCCAGTGAGCAGGGCCCATTCGGAGAGCTACAGACTGTCTCTGCCCTCTCCATGGTCTCTGCCACCTCCACCGCCATGGCCACGGCACACCCAGACCTACGCTCTGGCTTCCACAACACCTACAACACGCAGCTGCGGCAGAAGCACTACTACAGGGGCTATGAGTACGACATTCCCTCATCTGGCACGCTGCCACCACTGGCTACAATGGGCAGCCAGCACACGTACTGTAACATCCCTATGAGCCTGCTGAATGGCCAGCGACCACCGGGCCAACCAGCCCATGGGCAGCAGCAGAGCCTGGAGGAGCAGCAGGTCAACAACGCCCTGCTGCCACTGCTGCCTCGTGAGACCAGCATCTCCAGCGTCATCTGGTGA

Function

GO:

id name namespace
GO:0045920 negative regulation of exocytosis biological_process
GO:0050808 synapse organization biological_process
GO:0016322 neuron remodeling biological_process
GO:0007165 signal transduction biological_process
GO:0043025 neuronal cell body cellular_component
GO:0005886 plasma membrane cellular_component
GO:0043679 axon terminus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0050135 NAD(P)+ nucleosidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0061809 NAD+ nucleotidase, cyclic ADP-ribose generating molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090109-2 Predicted to enable NAD(P)+ nucleosidase activity and NAD+ nucleotidase, cyclic ADP-ribose generating. Acts upstream of or within neuron remodeling and synapse organization. Located in axon terminus and neuronal cell body. Is expressed in olfactory bulb; optic tectum; peripheral olfactory organ; and telencephalon. Human ortholog(s) of this gene implicated in intellectual disability and non-syndromic X-linked intellectual disability 21. Orthologous to human IL1RAPL1 (interleukin 1 receptor accessory protein like 1).

Ensembl:

ensembl_id ENSDART00000162886

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008875 lncRNA downstream 15115 44384814 ~ 44385749 (-) True XLOC_004387
TCONS_00008294 lncRNA downstream 280510 44100339 ~ 44120354 (-) True XLOC_004380
TCONS_00008293 lncRNA downstream 284416 44100339 ~ 44116448 (-) False XLOC_004380
TCONS_00008292 lncRNA downstream 292195 44100339 ~ 44108669 (-) False XLOC_004380
TCONS_00008874 lncRNA downstream 684560 43713710 ~ 43716304 (-) True XLOC_004376
TCONS_00008876 lncRNA upstream 37839 44447695 ~ 44450349 (-) True XLOC_004389
TCONS_00008877 lncRNA upstream 41384 44451240 ~ 44451660 (-) True XLOC_004390
TCONS_00008878 lncRNA upstream 112950 44522806 ~ 44524930 (-) True XLOC_004393
TCONS_00008314 lncRNA upstream 119714 44529570 ~ 44530479 (-) True XLOC_004394
TCONS_00008879 lncRNA upstream 192005 44601861 ~ 44603615 (-) False XLOC_004395
TCONS_00008304 mRNA downstream 53277 44340212 ~ 44347587 (-) True XLOC_004386
TCONS_00008302 mRNA downstream 124178 44265722 ~ 44276686 (-) False XLOC_004384
TCONS_00008301 mRNA downstream 124178 44265722 ~ 44276686 (-) False XLOC_004384
TCONS_00008300 mRNA downstream 124178 44265722 ~ 44276686 (-) True XLOC_004384
TCONS_00008299 mRNA downstream 186097 44178560 ~ 44214767 (-) True XLOC_004383
TCONS_00008307 mRNA upstream 42377 44452233 ~ 44484952 (-) False XLOC_004391
TCONS_00008306 mRNA upstream 42377 44452233 ~ 44484952 (-) False XLOC_004391
TCONS_00008308 mRNA upstream 42405 44452261 ~ 44485700 (-) False XLOC_004391
TCONS_00008309 mRNA upstream 64515 44474371 ~ 44485762 (-) False XLOC_004391
TCONS_00008310 mRNA upstream 64556 44474412 ~ 44485700 (-) True XLOC_004391
TCONS_00008303 other downstream 61644 44337157 ~ 44339220 (-) True XLOC_004385
TCONS_00008295 other downstream 277406 44123327 ~ 44123458 (-) True XLOC_004381
TCONS_00008250 other downstream 3025738 41375011 ~ 41375126 (-) True XLOC_004339
TCONS_00008244 other downstream 3316501 41078191 ~ 41084363 (-) True XLOC_004334
TCONS_00008236 other downstream 3704728 40678213 ~ 40696136 (-) True XLOC_004327
TCONS_00008317 other upstream 196995 44606851 ~ 44613734 (-) False XLOC_004396
TCONS_00008372 other upstream 1021677 45431533 ~ 45435014 (-) False XLOC_004416

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_00006427_00026938.mRNA True 3495 mRNA 0.43 9 CI01000306 5306 ~ 27452 (-)
bowfin (Amia calva) AMCG00014390 True 1037 mRNA 0.52 3 CM030128.1 11984073 ~ 12003809 (-)