XLOC_004392 (si:ch1073-365p7.2)


Basic Information

Item Value
gene id XLOC_004392
gene name si:ch1073-365p7.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 44491762 ~ 44499007 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008311
TTACAATCATAACAACCGAAAATAAAACCAGAGCTTTAGTAGATTTAATTATCGCACTTTTTTCCTGACGCTGTCTTGCTTAAAGAGAGATGAGTGTACAGAGGGAAAATGTCCAAACGTGCAGGGAATAAAATGGATTATTGCTCACCAAAAGAGTTAAGGGTAGTTCTTCTTGGGAAGCATCATTCTGGGAAAACATCGGTTATCAATACAGTTTTACAAAGCAGTGAAACAGCAGTGAAAGTATCCACAGATGTGAAAACAGAAGGATTTATAGACGGCAGGAGAATCTGTCTGATTGAAAGTCCTGGATGGTGGAAAACCTTTAATCTGACTGATTTATCAAACATCTCCAAACAGCAGCTGATTCGCAGGATTTCTCTGATCTCACCGGGACCTCACGCGGTTTTAATCGTGATTCGGGCAGATCGCACTTTCACTGATACTGATGCAGAATTTCTGGAGAAGAGTGTAGATCTGCTGGGTGAAAATATCTGGACTCACTCGCTCATCATCTTTACAAGAGGAGATCTGGTTAAACAAGAAGACATAAAGCGGAAAATCCAGGAATCTGCGCTCAGTCGAATTATTGgcaaatgtgaaaataaatatcaGGTTTTCAATAATATCAACCCTCACGACCAGACCCAAGTCAAAGAGCTGATCGGGAAAATTGAGGGGATTGTTGAGAAAAATGGCAAGCACTTTGATATTGACCAGGAAAAAGTAAGAGAAGTCAAAGAGCAGTTGGAGGAAATTCAGACCAGAGCAATTTCTAGAAAATGCAAAGTAGAGCAGCAGCGGAGTACAGTTCAAGAGAAAGcatgtgTGCGTCGTCTTGAGGAGATCAGACTTGTTTTGCTAGGATGGGTCCTCGCTGGAAAGAGCTCAGCCGGAAACATCATCCTTAACCAGGACGAATTTATAACAGGGGGAAAAACTAGAGCAACTATGAAAGGATTCAGAAAGATCGAAGGAAGAAAAGTCAGTGTGTTGGACACTCCAGGCTGGTGGAAGTACTTAGCATCAGAACTCAACCCTGATTTCATTACATCTGCCATACTGGAAAGCATTTCAGAGTGCGAGAAGTTCCCTCATGCCTTCCTGCTGGTGATTCCAGCCGATACGTCATTTCAGAAAGAGCAAAAGAGAATCGTGGAGGAAAACATGTCCATCCTGGGAGAGGATGTGTGGAGACACACCATAGTTTTATTCACGTGGGGCGACAGACTTAGCGATATATCAATCGAGCAGCACATCGAGAGCGAAGGAGAAGCTCTTCAGTGGCTGATTGAGAAATGCAGGAACAGATATCACGTCTTTAACAACATCAACAAAGAGAATCAAGCTCAAGTCTCTGAGCTGCTGAGGAAGATTGATGAAATGGTGGCCGAAAATAGCCTGTTTGTTCTCAACACGGAGAAAACTCCAGTAAAAACCGATGGAAGGGCTGACAATCAGGAAGAGGTGATCATCAGACTGAAGGACTTCCACTGCTTTTTGGATGCAGGGTTTAAGTTAAAAGCGCAAGAAATAAGACTAAAGATTGAAAAGTTGTTCATGCATGTGATGGAGGAACCTCTAAATGCTGACGAGTCCCAGAGTAAAGAGTTTGGTGTCACATTTACAGATCAGAAAACACCTTATGACTCCCATCAACCTCCTAAAGTCAACAATCCACCTCAACAGGACAACATTCCTGAGCAGATTAAAGCGCTTCTGGAGAGAGAGTTCAGCAGATGGGAAAGCATAATCATAGATGGCGTTCGGGAAAGTTTGCAGGACATCAAGTCATCATTTGAGCTTTCCCAGACTGAGAAGAGGATCAGGTCAATGGATGCTGTTGAGATGTGGCTAGAAAACTATTACCATTATATTGAACATACTATTGATAAAATTCAAGAACCAGAATCAGGGACAAAGAGAAAGAGACTGAAGACACAGTGATGGCATCAGAAACATGACTATTGAAAAGCAAGCAATCATGCATATGtacaataattttgacctcaacaaatatatatagaattttcttttcttttttaaatatttcccatattatgct
>TCONS_00008312
CCACCTTTGTTTCAAACGAATCACCTGAGGATTTACAATCATAACAACCGAAAATAAAACCAGAGCTTTAGTAGATTTAATTATCGCACTTTTTTCCTGACGCTGTCTTGCTTAAAGAGAGATGAGTGTACAGGTATGACTTTATACAGctctttataaatgttttagtacTACAAATGAAACATTGTTTATGTAgactaaatgacaaaaaaataagtcAACAAAAGGTATGTGTAATTGCatatctaataataaaaaatgcctttatttttattcatttatttattggttaCAAAATTTATATGTAATCTATAAAAAATCTATGTGCATTTACCAAATGTAATATCACAAATgcttaaaatttaaatttgtaatttatttattgttgtctTTAAGGCGGtatattgttttctgttttgaCATTGCCCATGTTTTTCACCACATCTGAACATGCTAGAGGGAAAATGTCCAAACGTGCAGGGAATAAAATGGATTATTGCTCACCAAAAGAGTTAAGGGTAGTTCTTCTTGGGAAGCATCATTCTGGGAAAACATCGGTTATCAATACAGTTTTACAAAGCAGTGAAACAGCAGTGAAAGTATCCACAGATGTGAAAACAGAAGGATTTATAGACGGCAGGAGAATCTGTCTGATTGAAAGTCCTGGATGGTGGAAAACCTTTAATCTGACTGATTTATCAAACATCTCCAAACAGCAGCTGATTCGCAGGATTTCTCTGATCTCACCGGGACCTCACGCGGTTTTAATCGTGATTCGGGCAGATCGCACTTTCACTGATACTGATGCAGAATTTCTGGAGAAGAGTGTAGATCTGCTGGGTGAAAATATCTGGACTCACTCGCTCATCATCTTTACAAGAGGAGATCTGGTTAAACAAGAAGACATAAAGCGGAAAATCCAGGAATCTGCGCTCAGTCGAATTATTGgcaaatgtgaaaataaatatcaGGTTTTCAATAATATCAACCCTCACGACCAGACCCAAGTCAAAGAGCTGATCGGGAAAATTGAGGGGATTGTTGAGAAAAATGGCAAGCACTTTGATATTGACCAGGAAAAAGTAAGAGAAGTCAAAGAGCAGTTGGAGGAAATTCAGACCAGAGCAATTTCTAGAAAATGCAAAGTAGAGCAGCAGCGGAGTACAGTTCAAGAGAAAGGTAAGTGGACTGTAAAGTGATGTTAAATGTCCTGTGAAACGCTCTGaaatatctttatttaatatatctcaactgaaacatgaagagagtgTGGGACTAATATTAGCTCCcccttttaaaaacagccaatagtgtttagttTTCTCTCGGCTCTGCCAATGAGAGTGGTtaagctcaagcacatcaaatgaaaagttaatgagaagaagggggcggggcatgtctgatactagagagcatttttATTGGTAAGAtggtttgatgagaaactaaagtaatgacaaaaaatcgttgatccatttagaCAGAAGTgacaagctttggatgtttatatcaggtttatgtCACAGATGTAGGGTGGGGAACGGAGCGATGACTTAACTAAAACACAAAATAGGtacttataaattataaaaaacaaaacgtaaaaacagcaaaacaaccaAGAGGGGTGAACGTTAACCAAAACTAAAAGaagtaaagttcgtagacaaacttctgaaagtttaaagttttaagaagtttgaaacaGTTGTAAGTATAGGTGAGCATGTTTTTCTTATGGATTGGCCTGTTGCTTGCTAGGCTGTTGATAGGGGGTTTTGAGTgtttgctaagtggttactagggtgttttgAATGGTTTTTAGcatgttctaagtggttgctaggtgttgctaggcagttaatAGGGTGTTCtaagcggttgctaggtggttgctaaggtcttgctagggTGTTTAGAATGGTTGTTAAAGTAGTGCTAGGT

Function

symbol description
si:ch1073-365p7.2 Predicted to enable gamma-tubulin binding activity. Predicted to contribute to microtubule minus-end binding activity. Predicted to be involved in meiotic cell cycle; microtubule cytoskeleton organization; and mitotic cell cycle. Predicted to be part of gamma-tubulin complex. Predicted to be active in centrosome and equatorial microtubule organizing center.

GO:

id name namespace
GO:0051415 microtubule nucleation by interphase microtubule organizing center biological_process
GO:0051225 spindle assembly biological_process
GO:0031122 cytoplasmic microtubule organization biological_process
GO:0051321 meiotic cell cycle biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0005813 centrosome cellular_component
GO:0000923 equatorial microtubule organizing center cellular_component
GO:0000930 gamma-tubulin complex cellular_component
GO:0008274 gamma-tubulin ring complex cellular_component
GO:0043015 gamma-tubulin binding molecular_function
GO:0005525 GTP binding molecular_function
GO:0051011 microtubule minus-end binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-160114-38 Predicted to enable gamma-tubulin binding activity. Predicted to contribute to microtubule minus-end binding activity. Predicted to be involved in meiotic cell cycle; microtubule cytoskeleton organization; and mitotic cell cycle. Predicted to be part of gamma-tubulin complex. Predicted to be active in centrosome and equatorial microtubule organizing center.

Ensembl:

ensembl_id ENSDARG00000105317

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008311 False 2065 mRNA 0.41 6 44491762 44498975
TCONS_00008312 True 1947 mRNA 0.37 2 44495858 44499007

Neighbor

gene id symbol gene type direction distance location
XLOC_004391 mfn1b coding downstream 6000 44452233 ~ 44485762 (-)
XLOC_004390 NA coding downstream 40102 44451240 ~ 44451660 (-)
XLOC_004389 NA coding downstream 41413 44447695 ~ 44450349 (-)
XLOC_004388 il1rapl1b coding downstream 81906 44400864 ~ 44409856 (-)
XLOC_004387 NA coding downstream 106013 44384814 ~ 44385749 (-)
XLOC_004393 NA coding upstream 23799 44522806 ~ 44524930 (-)
XLOC_004394 gpr137bb coding upstream 27885 44526892 ~ 44543082 (-)
XLOC_004395 NA coding upstream 102854 44601861 ~ 44603625 (-)
XLOC_004396 tbce coding upstream 106720 44605727 ~ 44622478 (-)
XLOC_004397 tomm20b coding upstream 138509 44637516 ~ 44647315 (-)
XLOC_004063 CR854846.1 misc downstream 28364084 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 31800071 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 31869995 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 31900466 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 31978500 12512966 ~ 12513262 (-)
XLOC_004381 FO704721.2 non-coding downstream 368304 44123327 ~ 44123458 (-)
XLOC_004380 FO704721.3 non-coding downstream 371408 44100339 ~ 44120354 (-)
XLOC_004398 NA non-coding upstream 217821 44716828 ~ 44722331 (-)
XLOC_004399 BX569779.1 non-coding upstream 251928 44750935 ~ 44756483 (-)
XLOC_004401 NA non-coding upstream 353575 44852582 ~ 44858601 (-)

Expression


Co-expression Network