XLOC_004346 (her15.2)


Basic Information

Item Value
gene id XLOC_004346
gene name her15.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 41994287 ~ 41996957 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008255
CTCatatatgtaaattaaaatataaaaaccccACATCAAGCTGAGATTGCAATCTTTCTCGTAAATGAatcaattttgtaaataaatcagttttgggAAGTTTAACAAGttcattaaatgtttatatttgattGAATAAGTTTAATTGTGGTAAATATGTAATGATTGTGGTAAGATCAAGTTTGAAATTTAAATTCTGAAACAAACTCACTTCAAATGCAGCAAATTCATATTAAACTTAAACAAATTGGAAATAATCTGATTAAATGGCACAGTAAATCATATATTTGCAacatgcattattattttaatttccaaatATTATACAGTGATTATGCCTTTAAATTAAACCAATAACTGCTTCTAAATGTTGTTATTAAAAGAATATTTATATGAATGTTTCTTCATTTTAATTCACAGTATCTTcactaaaaatattatgtttacaaaatattaaatgaagaggaagattataaaatattaaattaacagCATTGGCTTTAGTATgttaaaatgcatcaaaataaagcAGAAATACTTGCATGCAGTTCAATCTCACATTATTGCCACAATTTAATTATCGGAAAAACGGATTGACCTATTGATTAATTGAAACCAGAGAAAATAAGTGTAAGCCCTGTGGGATTTGTACAGCCcgtgtttgatttgatttgtgtaGGACGCCTCATCCAGCGGCCTCAGAGTGTGGGAAAGCTAATCCTGACTGGGACTCATGGCTTTGTAATGCTAATGAGCTCCTATAAATAGAGCAGCGAGACCCTCATTCCCGACACAAACCCCTCGCTCTGCTCAGAGAAACAGCATCTCTCCTGAAGAAGCAATGGCTCCTGTGTATATGACTGAATACTCCAAGCTTTCCAACAAGGAGAAGCACAAATTGCGAAAGCCAGTGGTGGAAAAGATGCGCAGAGATCGCATCAACAACTGCATCGAGCAGCTCAAGTCCATGCTGGAGAAAGAGTTCCAGCAGCAGGATCCCAACGCCAAGCTGGAGAAAGCCGACATCCTGGAGATGACGGTGGTTTTCCTCAAGCAGCAGCTGCGGCCCAAGACTCCACAGAACGCTCAGATCGAGGGCTACTCGCAGTGCTGGAGGGAGACCATCAGCTTTCTGTCTGTGGGCTCCGAGGCTGTGGCTCAACGTCTCCAGCAAGAAGCCCGGAGATCAGCAGCTCCAGAGCTCACACACACGTCTGAAGCTCCCcatcagcagcacacacacatcaagCAGGAGCCGCGGGCGCACGCTCCGCTCTGGAGACCCTGGTAGAGACGCTCGAACACTAGATGGTGGTTTACCGTCTCTTATGTAGGAGATTCTCCATTTACTATAGTACATCACTGATTCACATCGTGTGAAGAAATGAGAGATTCACCATGTGAACGCCTCGTCTTCTGCTGACGTTTAGATGTTATGATCAGAGGTTTATTAGTGTAGTTTTCCTCATGGATGGACATTAATATCAGACTCTGGTAGAGACGCTCAAACACTAGATGGTGCTTTATAGTCTCTTATCATGTAGGAGATTCTCCATTTACTCTAGTCATTTCTTTTGAAAGAGCACGTCACTTATTCTCATCGTGTGAAGAAATGAGAGATTCACCATGTGAACGCCTCGTCTTCTGCTGATGTTTATATGTTATGATATGATCAGAGGTTTATTATTGCAACACCTCTGTAGTTTTCCTCATGGATGGACTTTATTTTCTAGACATTTCTTCATGATGAAGAGTCAATGTTGAACTCCTGTGGAGTTGTGGATTATATGTGATCATTTGTGCATTATCAATGCTTTATTGGtgtttctttatatgaaagatgtgaattttgacttatttataatatatgattgtataatgttattgaaataaacacattttgaactGAAACACTTTCTGCTGTAGTTGATTTCTCATATTAAACTCCGCTTGCTTCATTAATAAACGTTTGAAATGCAAATTGTGCTTCTGTAATAAACTCACTGGTAAAATAATGTCCCTTTAGTTCATgtattactaacatgaacaaattatGCACAGCACACTCATTACAGTCTctttgtttacattagttaatggtAGTAAATTTATTCATAGTTACAGACACTGAGCCTCAAACACTATGTAGGAGATTCTCCATTTCTGAAGTACGTCACTTATTCTCATCGTGTGAAGAAATGAGAGATTCACCATGTGAACGCCTCGTCTTCTGCTGATGTTTAGATGTTATGATATGATCAGAGGTTTATTATTGGAACACCTCTGTAGTTTTCCTCATGCACATTAATACCAGACCCAGATAGagacagttgtagtcagaat

Function

symbol description
her15.2 Is expressed in central nervous system and retina. Orthologous to human HES5 (hes family bHLH transcription factor 5).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-070627-1 Is expressed in central nervous system and retina. Orthologous to human HES5 (hes family bHLH transcription factor 5).

Ensembl:

ensembl_id ENSDARG00000054560

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008255 True 2343 mRNA 0.38 2 41994287 41996957

Neighbor

gene id symbol gene type direction distance location
XLOC_004344 her2 coding downstream 27433 41966117 ~ 41966854 (-)
XLOC_004343 mrto4 coding downstream 140413 41846059 ~ 41853874 (-)
XLOC_004342 CR847970.1 coding downstream 207765 41782683 ~ 41786522 (-)
XLOC_004341 megf6b coding downstream 215006 41712391 ~ 41779281 (-)
XLOC_004340 NA coding downstream 284230 41699575 ~ 41710057 (-)
XLOC_004347 NA coding upstream 7206 42004163 ~ 42026598 (-)
XLOC_004348 NA coding upstream 19797 42016754 ~ 42019865 (-)
XLOC_004349 NA coding upstream 45605 42042562 ~ 42044281 (-)
XLOC_004350 abhd6a coding upstream 65110 42062067 ~ 42099645 (-)
XLOC_004351 si:ch211-193l2.10 coding upstream 104704 42101661 ~ 42106310 (-)
XLOC_004063 CR854846.1 misc downstream 25866609 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 29302596 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 29372520 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 29402991 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 29481025 12512966 ~ 12513262 (-)
XLOC_004339 CR759952.1 non-coding downstream 619161 41375011 ~ 41375126 (-)
XLOC_004338 NA non-coding downstream 677638 41283291 ~ 41316649 (-)
XLOC_004336 CABZ01087025.3 non-coding downstream 793015 41192329 ~ 41201272 (-)
XLOC_004333 NA non-coding downstream 1044469 40948889 ~ 40949818 (-)
XLOC_004352 NA non-coding upstream 116115 42113072 ~ 42125282 (-)
XLOC_004353 NA non-coding upstream 124898 42121855 ~ 42124271 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00002303 NA coding CM030136.1 CM030136.1 10926868 ~ 10929003 (-)