XLOC_004349


Basic Information

Item Value
gene id XLOC_004349
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 42042562 ~ 42044281 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008867
TTCAGCAACATCACTGCAGCGTCCGGCTCTTCTCCATCTGAAGGACACTTTCCTGACGCTCGTCTGTCTCCATCTGCAGCTGAGAAAGAAGATGCAGAGATGACGATCAGCTCTCCACAGCAGCTCTTCTGGCTCCAGAGTTCCTCCAAGCTGGAGAAAGAAAGCAGAGACGCTCCACTTGACATGCTGAGATTGAGCTCTTTCTGTCCAGAGAGGAGATGAAGAGGCGGAGATGAAGACTGCTGGAGCTGAACTAGAAGCTGCAGACTTACTTCATCATCTGAGCACGAGAGCTTCAGCAAAGTCAACAAGAGCTGGAGTTGAAGAGGCTTCCAGCAGCTCCACGTCTACAGCAGACGCTCAGACTCTCAGTGTATGAGGAGATGAAGACTTTCAGGAGTTCAGGAGAATCATCTGCTCTGATCATCAAGACTTCTGTGAAGAGACTCAATGAGCAGAGCTCCTGATAATAATGTCTATATTAGACAACTCTGACTTACTTCAGCTGCATCTTCATGAGATGTGACTGTTCTTATTGTCCTGTTTCAGGACCGAGAGACGAACATGAGTGCATCACTCTCTTAAGTGCTGATCCTGAATCTGCTGCTGCTTATTTATACAGCAACTTGTATCTGGACAAAGTGTGTTCTTCCTGTTGTGGgaaagtgtgtgtaaatgttgatCTTCAGTGAAGATTGCTGTGAGGAGACCTGTGATTTATTTACTAAATCTTGTTGTTTTGATTGATATTTCTGATCAGAAGTTgcttttattaaagcaaatgttaAACACTTGATGCATCATCAGATAAATCTCTTTAGTTTAAAGGGTGTTTATACGGCTTCATTCTACAAGCTGAGGAAGACTTTCAGGAGCTCCAGTTCGGACACATCTGATCTTCAAGACTTGTAATTCTCATTTTGAGAAAATACTATTTGTAGTTTAAGGAAATATCCTCTGGGTATAATGTTCACTATTGTGCTGATGCTTAATGTGACTGAAGTCAAATCAGTATTAGTTCTGCTTCATGTTGaaactgcatttgtttttattgtgaaaaGCATTAATTGATCATTTTTGATTATACTTGTGTCTGAAAACGATCCCTGTATCAGTGTCTATCTCCTCTATGAGGATTTGAACAAATGAAATGTCATTTCTATCATTCTCAATGGGTTTATGTTAAACTCTTTAGTTCATTAAGTATAGAGATCTATACATGTATCCTCTATATACTGCTGTATATGTACTCTGTATTTGCATTATTGCAGATCTGCTGTctatgcagcctgatctcacgagaaaacgtaagtattttacgttttgccagtttagtggctaattcatacgaattcgtacgagttcagtcgtacgaaatggtacgattttaaaaaggaggcgtggcacctgaccccacccctaaccccaaccgtcattgggggataagcaaatcgtactgaattgtacgaattagatcgtacgaattcatacgaattagccactgaatgaaaaagttacgaattgccgtgagattgtgttggtctaTGCCCAGCTCATAATGTgcaaatgtttgcatttattcAGATGATGTCCTCTCTGGTGTGTTTCTGCTTCAGTTTGATGAGGCGTATTGTTTCACAACGGATGCTTTCCACTGCGAAAGTAATGTGTATGAGAAATATTTTCTATATGAAgagaaaaataaacttttttcaaCTCT

Function

GO:

id name namespace
GO:0010604 positive regulation of macromolecule metabolic process biological_process
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0048468 cell development biological_process
GO:0010628 positive regulation of gene expression biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0007219 Notch signaling pathway biological_process
GO:0008152 metabolic process biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043009 chordate embryonic development biological_process
GO:0035270 endocrine system development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0051173 positive regulation of nitrogen compound metabolic process biological_process
GO:0021575 hindbrain morphogenesis biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0048522 positive regulation of cellular process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0031018 endocrine pancreas development biological_process
GO:0030182 neuron differentiation biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0009891 positive regulation of biosynthetic process biological_process
GO:0009893 positive regulation of metabolic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031325 positive regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0031328 positive regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1902680 positive regulation of RNA biosynthetic process biological_process
GO:0051239 regulation of multicellular organismal process biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0051254 positive regulation of RNA metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:1903508 positive regulation of nucleic acid-templated transcription biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0048869 cellular developmental process biological_process
GO:0045595 regulation of cell differentiation biological_process
GO:2000026 regulation of multicellular organismal development biological_process
GO:0014003 oligodendrocyte development biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0021953 central nervous system neuron differentiation biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0061564 axon development biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0048666 neuron development biological_process
GO:0050793 regulation of developmental process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0007399 nervous system development biological_process
GO:0048934 peripheral nervous system neuron differentiation biological_process
GO:0048935 peripheral nervous system neuron development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0048936 peripheral nervous system neuron axonogenesis biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0045935 positive regulation of nucleobase-containing compound metabolic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0060284 regulation of cell development biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0010557 positive regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0007422 peripheral nervous system development biological_process
GO:0007423 sensory organ development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0022008 neurogenesis biological_process
GO:0030902 hindbrain development biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0048699 generation of neurons biological_process
GO:0031175 neuron projection development biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0048709 oligodendrocyte differentiation biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0021510 spinal cord development biological_process
GO:0060322 head development biological_process
GO:0021514 ventral spinal cord interneuron differentiation biological_process
GO:0021515 cell differentiation in spinal cord biological_process
GO:0009790 embryo development biological_process
GO:0021517 ventral spinal cord development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0051960 regulation of nervous system development biological_process
GO:0005634 nucleus cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005488 binding molecular_function
GO:0005112 Notch binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0046983 protein dimerization activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008867 True 1720 lncRNA 0.40 1 42042562 42044281

Neighbor

gene id symbol gene type direction distance location
XLOC_004347 NA coding downstream 15964 42004163 ~ 42026598 (-)
XLOC_004348 NA coding downstream 22697 42016754 ~ 42019865 (-)
XLOC_004345 NA coding downstream 43145 41975577 ~ 41999417 (-)
XLOC_004346 her15.2 coding downstream 45605 41994287 ~ 41996957 (-)
XLOC_004344 her2 coding downstream 75708 41966117 ~ 41966854 (-)
XLOC_004350 abhd6a coding upstream 17786 42062067 ~ 42099645 (-)
XLOC_004351 si:ch211-193l2.10 coding upstream 57380 42101661 ~ 42106310 (-)
XLOC_004352 NA coding upstream 68791 42113072 ~ 42125282 (-)
XLOC_004353 NA coding upstream 77574 42121855 ~ 42124271 (-)
XLOC_004354 FP325130.1 coding upstream 84271 42128552 ~ 42134968 (-)
XLOC_004063 CR854846.1 misc downstream 25914884 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 29350871 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 29420795 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 29451266 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 29529300 12512966 ~ 12513262 (-)
XLOC_004340 NA non-coding downstream 332505 41699575 ~ 41710057 (-)
XLOC_004339 CR759952.1 non-coding downstream 667436 41375011 ~ 41375126 (-)
XLOC_004356 NA non-coding upstream 107163 42151444 ~ 42152573 (-)
XLOC_004363 NA non-coding upstream 698253 42742534 ~ 42745180 (-)
XLOC_004365 NA non-coding upstream 765233 42809514 ~ 42817704 (-)

Expression


Co-expression Network