XLOC_004345


Basic Information

Item Value
gene id XLOC_004345
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 41975577 ~ 41999417 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008491
GGCGTTTCTGGGTTTACAGCACACGAGCTTCCTTCCTCTCCCGCTGGGCAAAAACACTGTCACGGGCCACTAAAAGCGTGCCTGACACCTGCTTAGGGCTCCAGTCGTGTTGACAACACTAACAActgCAGGACTGAGGAATGCGTGAGAGCTCTGCTGATCTGCTCATTCCCACACTTCAGCCCATTGAGAGATCACTGATCCACAGCCTCATTATTCCTCTCTCAATAGACCATCTGCTGCTCAGAgctcagGTCCTTGTCATTCCCAATAAGACTTCATGATTCAACAGTTGTTTTCTGCTAGAATAAGGGGGCCGCTTTCCTGTTTTCCCTCTCTTTTTTTGTCCTAATGACCACAAACACGCTGTCAGGACTGAAGGGCTCTGAATGGGGCAGAAGGTTTTGGACAATGTCTGAAAGCAGAGCTGGAGGTGCTGGAATCTCATTCAGCTTCTGTCCCATCCAGAGTCATGATGAGAGGTCAGAGCCTTCCCAGACACACACTGCACacggacacacagacagacacacacactagccTCAGCATTCGTCTGACACTCTCTcctagtgtgtttgtgtttatacagatgagtgtgtttgtgtttatatacaCGTTTGTGTACATGTATGTGCATGTTAGCATTTAGATTGATGTGTCTGAAGCTTTGTTTGTTCATAAAGATGTGTGTGCGATTATGTTTATACGCAAGAGTGTTTCTATATACATATGTGGATCtgtttgtatatatacacacgaatatatttacatatacacaataatatatgtgtgaatgtttgtgtttatatgtgttatAATGTGTGCATTTTAGTGTCTATTTATGCATGTCCGTGTTTTTTACGTTTTCT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008491 True 869 lncRNA 0.43 3 41975577 41999417

Neighbor

gene id symbol gene type direction distance location
XLOC_004344 her2 coding downstream 8723 41966117 ~ 41966854 (-)
XLOC_004343 mrto4 coding downstream 121703 41846059 ~ 41853874 (-)
XLOC_004342 CR847970.1 coding downstream 189055 41782683 ~ 41786522 (-)
XLOC_004341 megf6b coding downstream 196296 41712391 ~ 41779281 (-)
XLOC_004340 NA coding downstream 265520 41699575 ~ 41710057 (-)
XLOC_004347 NA coding upstream 4746 42004163 ~ 42026598 (-)
XLOC_004348 NA coding upstream 17337 42016754 ~ 42019865 (-)
XLOC_004349 NA coding upstream 43145 42042562 ~ 42044281 (-)
XLOC_004350 abhd6a coding upstream 62650 42062067 ~ 42099645 (-)
XLOC_004351 si:ch211-193l2.10 coding upstream 102244 42101661 ~ 42106310 (-)
XLOC_004063 CR854846.1 misc downstream 25847899 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 29283886 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 29353810 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 29384281 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 29462315 12512966 ~ 12513262 (-)
XLOC_004339 CR759952.1 non-coding downstream 600451 41375011 ~ 41375126 (-)
XLOC_004338 NA non-coding downstream 658928 41283291 ~ 41316649 (-)
XLOC_004336 CABZ01087025.3 non-coding downstream 774305 41192329 ~ 41201272 (-)
XLOC_004333 NA non-coding downstream 1025759 40948889 ~ 40949818 (-)
XLOC_004352 NA non-coding upstream 113655 42113072 ~ 42125282 (-)
XLOC_004353 NA non-coding upstream 122438 42121855 ~ 42124271 (-)

Expression


Co-expression Network