XLOC_004365


Basic Information

Item Value
gene id XLOC_004365
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 42809514 ~ 42817704 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008869
AGCacttttataatcatttaaatcaaGTCCTTTACAAACAGTGACCGTGTCCAGCAGCTGTTTTGCAGAGTCCAGGTTGACTGATGTGCTGCGAGCCCTTCCGAACTGTCGcccatgcagacacacacagatcACACACTGCAGATATGTTGTTCTTTCATCTCTTTTGCCAGAGATCAGATGGTAAGTCTGACAACAAACAACTTGTTGTTTCCTTTTTACCGTGCACGAAGCGAGTGATAACCTCACACAGGATAACCCGAGCGTGAAACCAAATCACCGTCATTACAGATATGAAATCACTTGTGCAAATGCCCATAGAGTGAGTCTCACGACAGCcccaaatcaaacaaacaaacaaagtccAGAAATGATGCactaaaaacaattgttttttttttaaaggaacaccaCACTTATCTTGGAAATGGGCTTATTTTACACCTCAAGAGTTAAACATTTGAGCATTTATCattatataatcattattatatatatatacaatctcTGGGTCACTTTTAACTTGGCATAGAACATTTAATCGAATAAGACTATTAGAATCTTGCTCGAAAAATGACAAGAGTTTCGATATTATTCCTATTCAAAGCTGGATACTTCTGTACCTAGATagtgcacattaaaaaaatatatacactggatttactaaaaaatttttaaaggtaaatgagctgaatttaaacaatgttaaacattactcaatttaatttgcttgtttaaattcagcccatatgaatCATGTGCAACCAGTTAACTTAACAAAATGAAGTAAATCCAATAAACCAGAGTACTGAGACTGAGAATgagaagttgctattttctagattGATATGCCTGCAAACTATCCTATCATTGTGGCGTACTCATCAAGAAACTTTACTGCAGCACCGTAACTACAGCAGTGCAATGAAATTTTAGATAGCACTGATCACCCTCTTTCCAGCTCACATAATTATTTATGTCTACAAAGTCTCTCTGAGCTTTGATTGGGCCAGATCTCCTCTTGGGGGTGGGGTTATGCATATTAGTCTGCCTTGGAGGTGGGTCTGAAAACTGTGGTTTGATCGGACCAGTTCGTCTGTGATCTAAATGCCCATTAGAAAGCAGTGCAATGATATTTTAGATAGCACCTGAAAATCGGCTAACCTCCAAGTATTCTAGTTCAAATTGATACGATTCAGGAACTGCACTCAAGTAAATATCATTATTACAAGAAAAGAGACCAGACACTGATCACCCGTTTTCCAGTTCACATAATTATTTATGTCTACGGAGTCTCTCAAAGCTTTGATTGGGCCAGATCTTCTCTCGGGGACGGGGTTATGCATATTATTGTACCTTGGAGGCGGGGCTGAAAAATGTGGTTTGATTGGACCAGTTCGTCTGTGTTCTAAATCCCCATTAGGAAGCGGCGTGTTTGAAAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008869 True 1442 lncRNA 0.38 2 42809514 42817704

Neighbor

gene id symbol gene type direction distance location
XLOC_004364 si:ch73-106k19.5 coding downstream 48221 42746369 ~ 42761293 (-)
XLOC_004363 NA coding downstream 64334 42742534 ~ 42745180 (-)
XLOC_004362 CU459094.2 coding downstream 70366 42731890 ~ 42739148 (-)
XLOC_004361 si:ch73-106k19.2 coding downstream 79451 42720203 ~ 42730063 (-)
XLOC_004360 atp6ap1la coding downstream 255224 42532464 ~ 42554290 (-)
XLOC_004366 pcdh20 coding upstream 93200 42910904 ~ 42918971 (-)
XLOC_004367 EML6 coding upstream 111843 42929547 ~ 43002262 (-)
XLOC_004368 NA coding upstream 244178 43061882 ~ 43062986 (-)
XLOC_004369 acyp2 coding upstream 284717 43102421 ~ 43104475 (-)
XLOC_004370 sptbn1 coding upstream 317494 43135198 ~ 43226255 (-)
XLOC_004063 CR854846.1 misc downstream 26681836 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 30117823 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 30187747 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 30218218 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 30296252 12512966 ~ 12513262 (-)
XLOC_004356 NA non-coding downstream 656941 42151444 ~ 42152573 (-)
XLOC_004352 NA non-coding downstream 684232 42113072 ~ 42125282 (-)
XLOC_004353 NA non-coding downstream 685243 42121855 ~ 42124271 (-)
XLOC_004349 NA non-coding downstream 765233 42042562 ~ 42044281 (-)
XLOC_004371 NA non-coding upstream 383831 43201535 ~ 43204207 (-)
XLOC_004372 FO834831.1 non-coding upstream 410708 43228412 ~ 43230364 (-)
XLOC_004373 NA non-coding upstream 637765 43455469 ~ 43457258 (-)
XLOC_004374 NA non-coding upstream 643691 43461395 ~ 43466520 (-)

Expression


Co-expression Network