XLOC_004373


Basic Information

Item Value
gene id XLOC_004373
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 43455469 ~ 43457258 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008872
ttgtttgttttattttggctagaataaaagcagtttttaattttttatgaaccattttaaggtcaaaattataagccccttaagtcttcagaacaaaccattgttatacaataacttgcttaattaccttaacttgactagttaacttaattaacctagttaagcctttaaatgtcactttaagctgtatagaagtgtcttaaaaaatatctagtcaaatactatttactgtcatcatgtcaaagataaaataaatcagttattagagatgagttattaaaactattatgtttagaaatgtgtgggggggaaaaatcttctctccgttaaaagaaattggggaaaaaataaacagggatgctaataatttaggggggctaacaattctgacttcaactgtataactgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacacccacgacaaggttgtttttttttttttgtatctggccctcggcccaaaaagtttggacactcctgatttaaggtgacacggtggctcagtggttagcactgccgcctcacagtaaggtgtgtgttctctgcatgatGGGCTGGTGTGGTTTATAAAGGACTATAGTAATGTTTAAGACTGACAGCATTGAGAATGTTGGAGTCTGTGTCACACAATagaaaatatgataataatattcaCTGGCAgattaatgataataacattGGCAAAATAAACATACTTTGGTGTGGCAATAAAATCAAAGGGGCCGTTGGGTTTTATATAGAGACAATGTGTTCTTCAGTTGATCGTTTCTGATCTAGATCTGGTTTTTGGATATGGTTTGGATTCTGGATCTGGATTCCGCTCTGAATCTGGGTTTATGGCCGTGATCTGGATTCAGCTCTTGATCTGGTTTCTGATCTGGATCCAGTTTCAGCTCTGAATCTGGTTTACGCTCTGCATCTGGGTTTCTGGTCTTGATCTAGTTGTTTCTGCTCTGGATCAGGGTTTATGATTTTGATCTGGGTTTATGATCTGGATCTTGGTTTCTCCTCTGGATCTGGTTTTTGCTCTGGATCTGGTGTCTGCTCTGGATCTGGTTCCTGCTCTGGATCTGCTTTCTGTTCTGGATCTAGTTTTTGCTCTGAGTCTTGGTTCTTTCTCTGGATCTGGTTTTCTGCTTTGGATATAATTTGTAGTCTTGATCTGGTTTTTGCTCTGGATCTGGGTTTTCTGCTCTAGATCTGGTTTCTTGTCTTCAACACTGTGCTGTGTTTGATTCAGACGAGTCCTCTGAACAGAAAGGATAGAGACGCTCCGAGGGCCAGACCGAGAGACAGGAAGAAGGCCATGATGGCTCCTGCTGTTTCTGCTTCACTCGGGTCCACTTTcct

Function

GO:

id name namespace
GO:0090085 regulation of protein deubiquitination biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008872 True 1417 lncRNA 0.37 2 43455469 43457258

Neighbor

gene id symbol gene type direction distance location
XLOC_004372 FO834831.1 coding downstream 225105 43228412 ~ 43230364 (-)
XLOC_004370 sptbn1 coding downstream 229214 43135198 ~ 43226255 (-)
XLOC_004371 NA coding downstream 251262 43201535 ~ 43204207 (-)
XLOC_004369 acyp2 coding downstream 350994 43102421 ~ 43104475 (-)
XLOC_004368 NA coding downstream 392483 43061882 ~ 43062986 (-)
XLOC_004374 NA coding upstream 4137 43461395 ~ 43466520 (-)
XLOC_004375 tmem63bb coding upstream 12918 43470176 ~ 43473824 (-)
XLOC_004376 NA coding upstream 256452 43713710 ~ 43716304 (-)
XLOC_004377 INHBB coding upstream 490833 43948091 ~ 43948885 (-)
XLOC_004378 FP016005.1 coding upstream 562586 44019844 ~ 44030962 (-)
XLOC_004063 CR854846.1 misc downstream 27327791 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 30763778 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 30833702 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 30864173 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 30942207 12512966 ~ 12513262 (-)
XLOC_004365 NA non-coding downstream 637765 42809514 ~ 42817704 (-)
XLOC_004363 NA non-coding downstream 710289 42742534 ~ 42745180 (-)
XLOC_004380 FO704721.3 non-coding upstream 643081 44100339 ~ 44120354 (-)
XLOC_004381 FO704721.2 non-coding upstream 666069 44123327 ~ 44123458 (-)
XLOC_004387 NA non-coding upstream 927556 44384814 ~ 44385749 (-)

Expression


Co-expression Network