RNA id: TCONS_00008254


Basic Information

Item Value
RNA id TCONS_00008254
length 738
RNA type mRNA
GC content 0.42
exon number 1
gene id XLOC_004344
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 41966117 ~ 41966854 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACTTTACCTCAAAATGTTTTGAGTGTTTACTAACCAAACTTTTACCTTCTCTTTCCAGCTGAGGAAACCGGTGGTGGAGAAGATGCGCAGAGATCGCATCAACAAATGCATCGAGCAGCTTAAAATCCTACTTAAAACCGAAATAAAGGCCAGTCAGCCCTGTTCTAAACTAGAAAAAGCTGATATACTAGAGATGGCTGTTATTTACCTGAAGAACACCGCTGATGCGCATGCGCGGAGCTACTCGGAAGCGCATGCGCAGAGCTATGCTGACGGATATTCAAGATGCATTGAGGAAACGGCGCGATTTCTGTCAGCTCACAAACAAACCCAAAAACACTCTAAACCTGTTGACAGCTGTCAGATCACGTCAGAAATCGCCAAGCATGGATTGTGGAGACCCTGGTGACCTTTCTTAATTAAAGCCAAACGTGTTGTTTTTATAAAACGTCGACGTAGACAGCAGCTGTCCTGACGCATAGAATGTACAAGTCTACCCCATGTCTGAGTCTGAGAGCACCTGTATATCTATTGCTTTACTTCACGCGCGTGGAGATgaacttttatttacatattgtaaAAATGAGGGTTATATGGCACCTCAGTACGTTTCTGCTGAAATCTTCTTTTTAATGAGATGTGTAGCCTGCAGAGGTGTTGAATCTGTCATATTGACGGAATGTTTAAGTATCTCATGTTGAGttgaaaccaaaacaaaaaataaagtctcacTACTA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0007405 neuroblast proliferation biological_process
GO:0045664 regulation of neuron differentiation biological_process
GO:0045665 negative regulation of neuron differentiation biological_process
GO:0042063 gliogenesis biological_process
GO:0000785 chromatin cellular_component
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
ko04010 MAPK signaling pathway
ko04012 ErbB signaling pathway
ko04066 HIF-1 signaling pathway
ko04020 Calcium signaling pathway
ko04151 PI3K-Akt signaling pathway
ko04510 Focal adhesion
ko04520 Adherens junction
ko04530 Tight junction
ko05200 Pathways in cancer
ko05206 MicroRNAs in cancer
ko05205 Proteoglycans in cancer
ko05230 Central carbon metabolism in cancer
ko05212 Pancreatic cancer
ko05226 Gastric cancer
ko05219 Bladder cancer
ko05215 Prostate cancer
ko05213 Endometrial cancer
ko05224 Breast cancer
ko05223 Non-small cell lung cancer
ko01521 EGFR tyrosine kinase inhibitor resistance
ko01524 Platinum drug resistance
ko01522 Endocrine resistance
ko01001 Protein kinases
ko04147 Exosome
ko04090 CD molecules

ZFIN:

id description
ZDB-GENE-980526-274 Enables DNA-binding transcription factor activity, RNA polymerase II-specific. Involved in negative regulation of transcription by RNA polymerase II. Acts upstream of or within negative regulation of neuron differentiation; negative regulation of transcription, DNA-templated; and neurogenesis. Located in chromatin. Is expressed in several structures, including central nervous system; ciliary marginal zone; neural keel; posterior neural rod; and spinal cord neural tube. Orthologous to human HES5 (hes family bHLH transcription factor 5).

Ensembl:

ensembl_id ENSDART00000055709

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008864 lncRNA downstream 256060 41699575 ~ 41710057 (-) True XLOC_004340
TCONS_00008863 lncRNA downstream 649468 41283291 ~ 41316649 (-) True XLOC_004338
TCONS_00008247 lncRNA downstream 764845 41192329 ~ 41201272 (-) True XLOC_004336
TCONS_00008490 lncRNA downstream 1016299 40948889 ~ 40949818 (-) True XLOC_004333
TCONS_00008242 lncRNA downstream 1070872 40893766 ~ 40895245 (-) True XLOC_004332
TCONS_00008491 lncRNA upstream 8723 41975577 ~ 41999417 (-) True XLOC_004345
TCONS_00008865 lncRNA upstream 37309 42004163 ~ 42026598 (-) True XLOC_004347
TCONS_00008866 lncRNA upstream 49900 42016754 ~ 42019865 (-) True XLOC_004348
TCONS_00008867 lncRNA upstream 75708 42042562 ~ 42044281 (-) True XLOC_004349
TCONS_00008492 lncRNA upstream 146218 42113072 ~ 42125282 (-) True XLOC_004352
TCONS_00008253 mRNA downstream 112243 41846059 ~ 41853874 (-) True XLOC_004343
TCONS_00008252 mRNA downstream 179595 41782683 ~ 41786522 (-) True XLOC_004342
TCONS_00008251 mRNA downstream 186836 41712391 ~ 41779281 (-) True XLOC_004341
TCONS_00008248 mRNA downstream 743146 41216191 ~ 41222971 (-) False XLOC_004337
TCONS_00008249 mRNA downstream 745323 41216767 ~ 41220794 (-) True XLOC_004337
TCONS_00008255 mRNA upstream 27433 41994287 ~ 41996957 (-) True XLOC_004346
TCONS_00008256 mRNA upstream 95213 42062067 ~ 42099645 (-) True XLOC_004350
TCONS_00008257 mRNA upstream 134807 42101661 ~ 42106310 (-) True XLOC_004351
TCONS_00008258 mRNA upstream 161698 42128552 ~ 42134968 (-) True XLOC_004354
TCONS_00008259 mRNA upstream 184042 42150896 ~ 42230491 (-) True XLOC_004355
TCONS_00008250 other downstream 590991 41375011 ~ 41375126 (-) True XLOC_004339
TCONS_00008244 other downstream 881754 41078191 ~ 41084363 (-) True XLOC_004334
TCONS_00008236 other downstream 1269981 40678213 ~ 40696136 (-) True XLOC_004327
TCONS_00008222 other downstream 1783321 40182681 ~ 40182796 (-) True XLOC_004319
TCONS_00008210 other downstream 2876126 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008295 other upstream 2156473 44123327 ~ 44123458 (-) True XLOC_004381
TCONS_00008303 other upstream 2370303 44337157 ~ 44339220 (-) True XLOC_004385
TCONS_00008317 other upstream 2639997 44606851 ~ 44613734 (-) False XLOC_004396
TCONS_00008372 other upstream 3464679 45431533 ~ 45435014 (-) False XLOC_004416

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000057_00400397_00400972.mRNA True 850 mRNA 0.44 2 CI01000057 400057 ~ 401014 (-)
bowfin (Amia calva) AMCG00002178 True 864 mRNA 0.58 3 CM030136.1 6258047 ~ 6262305 (-)
mexican tetra (Astyanax mexicanus) TU253778 True 1493 lncRNA 0.40 2 NC_035918.1 3757369 ~ 3784341 (-)