RNA id: TCONS_00008492


Basic Information

Item Value
RNA id TCONS_00008492
length 286
lncRNA type inter_gene
GC content 0.48
exon number 4
gene id XLOC_004352
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 42113072 ~ 42125282 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGATGCAGAGGAAATATACATGGAGAATGTGATGCGACTGAGAGAAGAACAAACCACCCAACGGACTCAAGCGCAAGGAGAACATTAGAAACTGGACACATATACCACATCCACAGTAGACATCTTCAGGGGTTTTCATcgcttgtttttattttcagagGCAATGCAGCTCAGCACCACCTTCAAGATGGGCAGTTTCCAGTGGCACCACGTGGAGGAACGGACTTCGCCACCTATATATACAGGGTTGCACCTTTAGCGACAGCTTTACAGCCGGGCTTAGCAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008867 lncRNA downstream 68791 42042562 ~ 42044281 (-) True XLOC_004349
TCONS_00008865 lncRNA downstream 86474 42004163 ~ 42026598 (-) True XLOC_004347
TCONS_00008866 lncRNA downstream 93207 42016754 ~ 42019865 (-) True XLOC_004348
TCONS_00008491 lncRNA downstream 113655 41975577 ~ 41999417 (-) True XLOC_004345
TCONS_00008864 lncRNA downstream 403015 41699575 ~ 41710057 (-) True XLOC_004340
TCONS_00008494 lncRNA upstream 26162 42151444 ~ 42152573 (-) True XLOC_004356
TCONS_00008495 lncRNA upstream 609982 42735264 ~ 42735848 (-) True XLOC_004362
TCONS_00008496 lncRNA upstream 617252 42742534 ~ 42745180 (-) True XLOC_004363
TCONS_00008497 lncRNA upstream 627619 42752901 ~ 42754000 (-) False XLOC_004364
TCONS_00008869 lncRNA upstream 684232 42809514 ~ 42817704 (-) True XLOC_004365
TCONS_00008257 mRNA downstream 6762 42101661 ~ 42106310 (-) True XLOC_004351
TCONS_00008256 mRNA downstream 13427 42062067 ~ 42099645 (-) True XLOC_004350
TCONS_00008255 mRNA downstream 116115 41994287 ~ 41996957 (-) True XLOC_004346
TCONS_00008254 mRNA downstream 146218 41966117 ~ 41966854 (-) True XLOC_004344
TCONS_00008253 mRNA downstream 259198 41846059 ~ 41853874 (-) True XLOC_004343
TCONS_00008258 mRNA upstream 3270 42128552 ~ 42134968 (-) True XLOC_004354
TCONS_00008259 mRNA upstream 25614 42150896 ~ 42230491 (-) True XLOC_004355
TCONS_00008260 mRNA upstream 179303 42304585 ~ 42418374 (-) False XLOC_004357
TCONS_00008261 mRNA upstream 182283 42307565 ~ 42315748 (-) False XLOC_004357
TCONS_00008262 mRNA upstream 182495 42307777 ~ 42417194 (-) False XLOC_004357
TCONS_00008250 other downstream 737946 41375011 ~ 41375126 (-) True XLOC_004339
TCONS_00008244 other downstream 1028709 41078191 ~ 41084363 (-) True XLOC_004334
TCONS_00008236 other downstream 1416936 40678213 ~ 40696136 (-) True XLOC_004327
TCONS_00008222 other downstream 1930276 40182681 ~ 40182796 (-) True XLOC_004319
TCONS_00008210 other downstream 3023081 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008295 other upstream 1998045 44123327 ~ 44123458 (-) True XLOC_004381
TCONS_00008303 other upstream 2211875 44337157 ~ 44339220 (-) True XLOC_004385
TCONS_00008317 other upstream 2481569 44606851 ~ 44613734 (-) False XLOC_004396
TCONS_00008372 other upstream 3306251 45431533 ~ 45435014 (-) False XLOC_004416

Expression Profile

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