RNA id: TCONS_00008260


Basic Information

Item Value
RNA id TCONS_00008260
length 6941
RNA type mRNA
GC content 0.45
exon number 23
gene id XLOC_004357
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 42304585 ~ 42418374 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGGTGGTGCGCGAGCCCCGCGGCGGTTTGTGGccggtgtgtatgtgtgtgtatatctctTCAAGTGGACGACTTACTTCCAATTATCCCGTCGCACACAACGATTTTCCTCCCGATTTCAGCGTTCCGGAAAGCGGAGACCTCCATGGCTTAACACGGGACCGTGTCATGGACTTTATTCGTGTATGACTTTCTTTTCTGGGGAAATTTTTGTGTCTCTCAGCAGGCTAAGCTAGTTACCGAGCTCGCGAGCTAATACTGGATTTACGCAAATTCTCCGCGCATGAAAGTTCCACAGACCGAACAAATAGCTGGTTTTCGGGGATAAATCAGCTCGGGGTTATTTATAAAGTCTCTTCCAGCTTGGACGGCTCGATAAGGTGAAAGTAGAAGGCCAGTGTTACCTCAGCGAAGCTAACGAGCTAATATGAAGTTAGCCAGCTAACGCTCTCGTGCGCAAGAAAACACCCTCCGCGCGAGCTGTGCTCTTGTATACAATCCTGACAGCTAAATACTTGCATTTGAAGTCTGTTTAAGTAGGCATTTGAGGTATTTTTCAATATTAATTACTCTGTCTTGGGGAGTGGTGGCTTGATGGTCTGTTCTGCATACTTCAGCCAAACCCACTCACATCATTATTAATCTTCATTACGGTTTAGCATTTTCACAAGTGCATTTCGTGCCCAGCAGTCATTCCCTCTAAATATAGACACGCATGTCAACGTGACAGTAATACTTCTTTTTTTATGAGTAAAGGTTGACCAATTCAACAGGTTATTGGTGTACTAGTTGCTGGGTTGTTTACTGGCCAGGCCTATGCTTGTAAAGGGGGACGAGGATGAATTGTGTTGGGAACGAAGTATAACAGCTCGAATTGTGGACTGTCATCTGGACACACAGATTTGTATGGAATTGGGCAGCTGTATTGGGTTTGGTTCGGCAACATGGGGGTCTCGCAAGGGGGCAAGAAGTCATCTACATAGTGTATAAATATACAGTCTTGTTGACGTTATGTAGTCGGTTTAGCAGGGGTCTTTTTGTAGAGTTGGAATTTTTTTCGTATTACTATGTGCGTTGGTCTGCTGGTCATTCATTAGGAAGAATTGGAGCAACAGGTCAGTCTGGATCAAGAAACCCTGTCTTTCGTCTCTGGTTGGAGTAACACTCCCAAGCCATCCTCAATGCCTTCAGCGCTGGCCGTGTTCTCCTGCCGCCCGAATTCACACCCGTTTCAGGAACGCCATGTTTACCTGGATGAGCCGGTCAAGATCGGGCGCTCCGTGGCCCGGTGTCGCCCTGCCCAAAACAACGCCACCTTCGACTGCAAAGTGTTGTCGAGGAATCACGCTCTGGTATGGTTCGACCACAAGACAGGCAAGTTTTATCTCCAGGACACCAAAAGCAGCAATGGGACCTTCATCAACAGCCAGCGTCTGAGCCGCGGGTCAGAGGAGAGTCCGCCCTGTGAGGTGCTCTCCGGTGACATCATTCAGTTCGGGGTGGATGTGACTGAAAACACCCGCAAAGTCACACATGGCTGTATAGTGTCCACCATCAAGCTCTTCTTACCAGATGGCATGGAAGCTCGGCGGCGATCAGATGTTGTTCCTGCACCACTGCCACTGGCTATTGATAAGGTGTCCGCAAATACTCCCAGTATGTATTCTCAGGAACTGTTTCAGCTCTCCCAGTACCTGCAGGAGGCCTTACACAGAGAGCAGATGCTGGAGCAGAAGTTGGCCACACTGCAGAGGCTGCTGGCCAGCACACAGGAGGCGTCAGAGAGCAGCTGGCAGGCTTTAATCGATGAGGACCGGTTGCTCTCCAGATTGGAGGTGATGGGGAACCAGTTGCAAGCGTATTCCAAAAACCAAACAGAAGACGGTATCCGAAAGGAGCTTGTTGCCTTAACAGAGGACAAACATAATTATGAGACGACAGCCAAAGAGTCCCTGAGGCGGGTCCTTCAGGAGAAGATCGAGGTGGTCAGGAAGCTGTCTGAGGTCGAGAGGAGTTTGAGTAACACAGAAGACGAGTGCACACACCTGAGAGAGATGAACGAACGCACACAGGAGGAGCTCAGAGAACTCGCCAACAAATACAACGGAGCCGTCAATGAAATCAAGGATCTGACAGAAAAGATCAAGTTGGCGGAGGATAAACATGAGGAGCTCACACAGAAAGGCCTGAACGAGAAGAAGGAGCTGCAGATGCGGATCGAGGAGATGGAGGAGAAGGAGCAGGCGCTTCAGGCCCGAATCGAAGCTCTGCAGGCTGACAACGACTTCACCAATGAGAGACTGACAGCTTTGCAAGTCCGGTTAGAGCAGCTGCAGGAGAAAAGCATAAAGGAAAACAACAGTTTTGCGGTGCGCCAGCTGAAGGAAGCTGTGGACTCTTCCATTAACAAGCTGTCCAACTTTGATGAAGTCATCGATGCACATCTTCAGAATAACCAGACGACAGTGGACAACAGCTTACCCAGTCCAGACAGACTTAAAGAAAACCAAATAGACGCTAAAGAGTGTGATATGTCAGATACTCTGAGCCCCAGCAAGGAGAAAAGCAGTGACGACACTTCAGACGGACAGATGGAAGAACAAGAACTGAACGAGCCCCAGAACCGCGTTTCTCTTCTGAAAGAAATGGACAGGAGCTTGGAAGCTGGAGACACCGAGCAGGTGATTCCACACATCCACCGGGAGCTGCAGGAGGCACAGGAGCTCGCCAACACCGGCAAACAGAAATGCCTCGAGCTTCAAGCCATGCTGGAGGAGGAGAGGAAAACCAACCGACAGCAGACCGAAGAATCTGCTAAACAGATCCGCTTCTTACAGACTCAACTAGCGAAGCTGCAGACTGATATGGAGGCTTTGCGAGAACAGCGAGAGAACACTATCACCACCACTCGAGAGGAGCTGTACAGCGCTCAGGAGGAGATCCTGGTGCTCCGGCACGCCATGGAGGCCGCCACCGCCGAGCGGGAGCGAGAGATCACCGCCCTGCAGGGAGACCTGAGCATCGTCACTGCCGAGCTGGACAAATGGAGACAGACGGCAGCCAAATATGAAGTGGAGATCAGCAATCTGCAGGCCAGCTTTCAGCTCCAGAGCCAGCACCAGGAGAGAGCTAGCCAGCTCCAAGgtgAAGTGGAGAAGCTGCAGGCCGATTGCTCTGGTCTGCAGAATGAATGTGACAGTCTCCGGGCTGAGAAAAGCACGCTGATGCAGAAACTAAACAGACTAGAGGAAGAGCTCGACagCTCCAGAGAGCGCAGTGCGACGTTGAGCAGCAATCTGAACGCTCTGGAGAAATCCCAGGGTGATCTAGAGAATAAACTGGGCTCAATACAAGACCAGCACCAACAGGATGCCAGCAAACTGAAGATCCAGCTGGCCCAAGCCGAGAGCCGTACCAGAGACCTGCAGAAGGAGTACGACGATACTCAGAGTCTCCTGTCTGATCTACGGCAGCGCTATGAACAGACGGAGCAGGAGAAACGCTCAATCAACGATGAGCTGGAACAGTGCAAAGTCAACCTCAAACTCCTGCAGGACAAGGGCAGCAATCCATCCATATTGCAGCCTGTCCAAGCCATTTTCATCGGTCTATTCCTGGCTTTGCTGTATTGGTGCTTCGGCCAGTTGTGGTAGAAAGAGCGGATGGATGCCCTGGATGCCGGTGGTTGCCGCCGTAGTGGCTGTTACGGCGGTGGTGCTTTATCCCAGTTTGTCCAAGAGCTCATCCTGAGAATGTTAACCAATCACAACACCACCACTTCCAGTCCCAAACAATGCCCTCTGTCCAATATCAGTGTCAGATTTAGACATCTGACAATAATACCTCTCGTTTTGTCTGTTCGACAGCCCCCGACGTCTGTGTAAAATGCAAATGTATATAGTATAGAATGAAAGAGGGAATAAAATTGTAATGCATATTATAGAATAAATAATCTATCTGCATTTTTGTCACTCGGATGGGAATTTTTGGATTATTCAAATGGCCTAAAATAGGTCTTTTTCTTTGGGATGGGTACTGTATTTTATTCTGCTAGTGACGTTTTCTTCCTCGGACTCTTTCTTTGTGGGTTTGCCATGTGGTGAATCCCAGTATATGTACAGCCAAATGAGAAATCAAGGGCACAGAAGGGTGAAGTGCCTActttaaatactactactactaatatagTTCACATTGAAGTGCCACTCTCGTTCCACTCATGCAGCGCATCATCAATCTCAAATggagacaaaaaaaacaacaactaaagtcTAAATTTTTACGTCGTGTGCTGTGATTGTGTGTTCAAATCCGACATGCTTCTAGCACAGTGAGATGTCGTTGTTCTCTATGGCTGTTGTATCATGTATTATACGCAAATGTTCATGTCAGAAACACTACAAGTTATATATAGGGGATTTCGAAATTCGACGTTCTTGATTGTGGTCATTGGAAAATGGATTGAAGCGTTGACCTAAAAcgaacaaataaaacacacacacacacacacacacacacaaacgtagcTTTTTACCAACACACTGTCCTGCTGTCTGGACTAAAAAGGAGCACTTTGAGTTCACAGCTCCTGTTGTTTGTTTCTGTACTAAATCTCCGACAGTacctcctcaaaaaaaaaaaaaaaggctctgGGATTTTGCTGCCTTATCTGTAACATAGGTTTTGGAAATCGGATGCTTTAAAAATGAATGGGAAGCACAGGAAAGTTATTTTTGTTGGTGAACGGCGTGTATTTGTTGAAATGTGGATGTTGTGCGAGCTGCTTTGAGAGACTTTTGGAGGAAGATGAATTAACCGATGATGTGTTTGGTGTGTGGTTCACATTTGTCTGCTGTGCTGTAAATAAACAGACGTGGAGCATAAAAAAAAGCCTAACTCGTCTGGTTCAACGTGTCGAGGACTTGTTTTTGCATctctttctattattttttttttgtatcacttTACTGGAAAGACATACATCAACAATCCATTGAACGCTTCAACATGGATTTAACCACGAatgcaaaacaaagcaaagcttGTAGCACAGAAAGGATAGCTTTAAAATGATCTCCTGCATTTTGTTCATAATGCTTTCGTTAAACAGCATGATGgactttttattctttatttttaggtgtttttttttggagaaatcgTCCTTCACGTTAGAAGATTGCTTAGGCTGttgtaaatatgtatgtatgaatgtttgtgtgtaaatatatgttatagtcacaaaaaagaataaaaattggTTATAAATGATGTTGGTCACATCTAATTTGCTCCTGGAGACACTTGATTAATacgtaattttttatttaatacgaGTTCTCCTTGTTAGTTTGGTTTTCTACATGAATTTTTAACATCTTTTTGGCCTTGCAAACACGTTTTTTAATTCAGGACTTTTATTTCCACGTTAAGATTGCATGTTTTGCAGaccaagttttttttcttctagctGCCTCAAGAGTTTGGGAACTAATGACCTATTTCCACtcagtggtacggtacagtttggtagctttttatggccgtttccactgtcaaagggtacctaaaagcgaaccgcaccgtaccactttttggatACCCGTTGCAAAGGGTACCTGGCCcggcaaaagggtaccaaaaggcgaagCTAGACTCGCAgctaaacgctattggtttaTAGAGATATGTCACTTGCTCATGGACAAGGCTTGTTTTCTAAGACATCTTTAAATTGGTCAGAAACTTCCAGTTAAGACAGTACAGTACTGCACACTGCCTGtacctatatatttatattggtcTGTATTGTTTTAGAGCTCAGAATGACTTGTTTTGAACATCAACGGTAGTTCATTGTCAGAAATCTATTTTAAAAAGACAGGATATAAGTGATTTAATGTCTTGGATACAGATAAAGGGTATATTTGCACTAACACGTGTGATGTGCATGACTCCAATAAAACAACTTCACTTTTCTTGACTAGTTTGACTCTTTTCTGTCAAGTTTATTCACTGAGGCGGGCAAAGATTTATTAGTGCTGGACACAAATTAATCTAGATTAGTTACAtccacggtggctcagtggttagcactgtagtctcacagcaagaaggtcgctgtttcgagtcccagctgtgtcagttggcgtttctgtgtggagtttgcatgttctccccgtgttggcgtggatttcctcttggtgctctggAGTTTGTTTTTTAAACGTTTCTTTTGTTATTGTCTCTTGTTCATTATGAAGCATCTTTGGCATTTTTGAGACCCTATTAAAGAGTACGATGATAAAGGGTTTCTTTCACGCGTGCACATCTCCTTGAACTTTTTTTGGTAACAcgttaaaataatggtccattagttaatgagtttactaacatgaacagtaACCCTTTAGATTAGGTCATATAATAAtcggcaggtaataagccagtagtgcaggggtggccaaccctgttcctgcagagccaccttcctgcagatttcagttgcaacccatatcaaacacacctgcctgtaattatcacgtggtgttcaggtcctaattaattggttcaggtgtgtttgatgtgggtagcaactgaaatctgcaggaaggtggctctgcaggaacagggttggccacccctgaaccactggcttattacctgcctattattatgaTATTAACTGTTCATCGGTATGTAGTTGtaaagcagggatcaccaaacttgttcctggagatccggtgtcctgcagattttagctccaacccttttCAAACACCTGAACAatctaatcaaggtcttactaggtatacttgaaacaccttTTCAATTATTCAAcgcctttcatgtatacaaaacactcttatttacctttattttgtttggtttttaaaaacatcatgtctggaaatgacgtagaataaatgtgtttccttatca

Function

GO:

id name namespace
GO:0006936 muscle contraction biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-061013-184 Predicted to be involved in protein localization to plasma membrane; regulation of membrane depolarization during cardiac muscle cell action potential; and regulation of voltage-gated sodium channel activity. Predicted to act upstream of or within muscle contraction. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLMAP (sarcolemma associated protein).

Ensembl:

ensembl_id ENSDART00000160704

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008494 lncRNA downstream 152012 42151444 ~ 42152573 (-) True XLOC_004356
TCONS_00008492 lncRNA downstream 179303 42113072 ~ 42125282 (-) True XLOC_004352
TCONS_00008868 lncRNA downstream 180314 42122748 ~ 42124271 (-) True XLOC_004353
TCONS_00008493 lncRNA downstream 180333 42121855 ~ 42124252 (-) False XLOC_004353
TCONS_00008867 lncRNA downstream 260304 42042562 ~ 42044281 (-) True XLOC_004349
TCONS_00008495 lncRNA upstream 316890 42735264 ~ 42735848 (-) True XLOC_004362
TCONS_00008496 lncRNA upstream 324160 42742534 ~ 42745180 (-) True XLOC_004363
TCONS_00008497 lncRNA upstream 334527 42752901 ~ 42754000 (-) False XLOC_004364
TCONS_00008869 lncRNA upstream 391140 42809514 ~ 42817704 (-) True XLOC_004365
TCONS_00008870 lncRNA upstream 643508 43061882 ~ 43062986 (-) True XLOC_004368
TCONS_00008259 mRNA downstream 74094 42150896 ~ 42230491 (-) True XLOC_004355
TCONS_00008258 mRNA downstream 169617 42128552 ~ 42134968 (-) True XLOC_004354
TCONS_00008257 mRNA downstream 198275 42101661 ~ 42106310 (-) True XLOC_004351
TCONS_00008256 mRNA downstream 204940 42062067 ~ 42099645 (-) True XLOC_004350
TCONS_00008255 mRNA downstream 307628 41994287 ~ 41996957 (-) True XLOC_004346
TCONS_00008269 mRNA upstream 48460 42466834 ~ 42472941 (-) True XLOC_004358
TCONS_00008270 mRNA upstream 87678 42506052 ~ 42525450 (-) True XLOC_004359
TCONS_00008271 mRNA upstream 114090 42532464 ~ 42554290 (-) True XLOC_004360
TCONS_00008272 mRNA upstream 301829 42720203 ~ 42730063 (-) True XLOC_004361
TCONS_00008273 mRNA upstream 313516 42731890 ~ 42739148 (-) False XLOC_004362
TCONS_00008250 other downstream 929459 41375011 ~ 41375126 (-) True XLOC_004339
TCONS_00008244 other downstream 1220222 41078191 ~ 41084363 (-) True XLOC_004334
TCONS_00008236 other downstream 1608449 40678213 ~ 40696136 (-) True XLOC_004327
TCONS_00008222 other downstream 2121789 40182681 ~ 40182796 (-) True XLOC_004319
TCONS_00008210 other downstream 3214594 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008295 other upstream 1704953 44123327 ~ 44123458 (-) True XLOC_004381
TCONS_00008303 other upstream 1918783 44337157 ~ 44339220 (-) True XLOC_004385
TCONS_00008317 other upstream 2188477 44606851 ~ 44613734 (-) False XLOC_004396
TCONS_00008372 other upstream 3013159 45431533 ~ 45435014 (-) False XLOC_004416

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_02022802_02080261.mRNA True 2466 mRNA 0.53 22 CI01000306 2022802 ~ 2080261 (-)