XLOC_004358 (arf4b)


Basic Information

Item Value
gene id XLOC_004358
gene name arf4b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 42466834 ~ 42472941 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008269
GTTAagaagaattattaatattatttattaaatttcccatttattttaTGGTATAACCCCTACCCCAGCCCTAAATCTAtcccacagtaatgtaaaacagcagttgtaccgagtattatttatgctatttattaaattacccaattttTATCAACGCCTATCCCCACCACAACCAtcccagtactgtaaaaatatgaattattgtcatacagtgttagaAAAATGAAGCTATATTGATGCgcatatccgcagctgtatcccatctagactttacaTTCATGGATACCGTCTGCTTTAGACACGTGACAGTTGGTGACGTCATATCGAACGCGTTGGATTTGCCGCGAGAAAAGCGGAGGTCGATTTGTGTGTGAGTGGCGGAGTTGAGCTGTCAAACCGAAAGCAAAAAgccctatataaacacacacacacactcactgatcATCACACAGAGAATCTCAGCCTCGCACTCCACACCAAACACGGCGAACAGCACTTTTAACTGCACTTTAAATAAACATGGGCGTCTTCTTCTCTAACCTTTGGACGCGTCTGTTTGAGAAAAAGGAGATGAGGCTGCTTATGGTTGGTCTGGATGCAGCAGGGAAAACTACAGTCCTCTACAAACTCAAACTGGGTGAAGTTGTCACAACTATTCCAACTTTAGGATTTAATGTGGAGACGGTGGAATATAAAAACATCTCGTTCACTGTGTGGGAGGTCGGTGGTCAGGATATTATCAGACGCCTCTGGAGACACTATTATCAGAACACCAAGGGTCTGATCTTCGTGGTGGACAGCAGTGATCGGGACAGGATTGAAACGGCAGCAGAGGAGCTGAAGATGATGCTGGCGGAGGACGAGATGAGAGACGCTGTTTTACTAGTTCTGGCTAACAAGCAGGATTTACCCAAAGCCATGGCGGCCCACGAGCTCACAGAAAGACTGGGTTTACATGCACTAAGAGGAAGAcagtggTTTGTTCAGTCCACATGTGCAGTTCAGGGATCGGGTTTATACGAAGGACTCGACTGGCTCACAGATCAACTCTCCAAACGATAA

Function

symbol description
arf4b Predicted to enable GTP binding activity. Is expressed in brain; eye; forebrain; and midbrain. Orthologous to human ARF4 (ADP ribosylation factor 4).

GO:

id name namespace
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-205 Predicted to enable GTP binding activity. Is expressed in brain; eye; forebrain; and midbrain. Orthologous to human ARF4 (ADP ribosylation factor 4).

Ensembl:

ensembl_id ENSDARG00000100339

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008269 True 1062 mRNA 0.44 6 42466834 42472941

Neighbor

gene id symbol gene type direction distance location
XLOC_004357 slmapa coding downstream 48460 42304585 ~ 42418374 (-)
XLOC_004355 FLNB coding downstream 236343 42150896 ~ 42230491 (-)
XLOC_004356 NA coding downstream 314261 42151444 ~ 42152573 (-)
XLOC_004354 FP325130.1 coding downstream 331866 42128552 ~ 42134968 (-)
XLOC_004352 NA coding downstream 341552 42113072 ~ 42125282 (-)
XLOC_004359 pde12 coding upstream 33111 42506052 ~ 42525450 (-)
XLOC_004360 atp6ap1la coding upstream 59523 42532464 ~ 42554290 (-)
XLOC_004361 si:ch73-106k19.2 coding upstream 247262 42720203 ~ 42730063 (-)
XLOC_004362 CU459094.2 coding upstream 258949 42731890 ~ 42739148 (-)
XLOC_004363 NA coding upstream 269593 42742534 ~ 42745180 (-)
XLOC_004063 CR854846.1 misc downstream 26339156 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 29775143 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 29845067 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 29875538 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 29953572 12512966 ~ 12513262 (-)
XLOC_004353 NA non-coding downstream 342563 42121855 ~ 42124271 (-)
XLOC_004349 NA non-coding downstream 422553 42042562 ~ 42044281 (-)
XLOC_004348 NA non-coding downstream 446969 42016754 ~ 42019865 (-)
XLOC_004365 NA non-coding upstream 336573 42809514 ~ 42817704 (-)
XLOC_004368 NA non-coding upstream 588941 43061882 ~ 43062986 (-)
XLOC_004371 NA non-coding upstream 728594 43201535 ~ 43204207 (-)
XLOC_004372 FO834831.1 non-coding upstream 755471 43228412 ~ 43230364 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_02107105_02108186 ARF4B, ARF4 coding CI01000306 null 2106894 ~ 2108266 (-)