CI01000306_02107105_02108186 (ARF4B, ARF4)


Basic Information

Item Value
gene id CI01000306_02107105_02108186
gene name ARF4B, ARF4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 2106894 ~ 2108266 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_02107105_02108186.mRNA
ACTAACAATCTGAGCCTCGATCTCTGGATATTTATTTTCACTAAATACAGCAAATAGCTTTCACATCTGCACTTTTCAAAATGGGCGTCTTCTTCTCTCACATTTTCTCACGTCTCTTTGAGAAAAAAGAGATGAGGTTGCTTATGGTTGGTCTGGATGCAGCAGGGAAAACAACAGTCCTCTACAAACTCAAACTTGGTGAAGTTGTCACAACTATTCCAACTCTAGGTTTTAACGTTGAGACAGTTGAATATAAAAACATCTCTTTCACGGTTTGGGATGTCGGGGGTCAGGACATTATCAGACGCCTCTGGAGACATTACTATCAGAACACTAAGGGTCTGATCTTTGTGGTGGACAGCAGTGATCAGGACAGGATTGAAACGGCAGCAGAGGAGCTGAAAATGATGCTGGCGGAGGATGAGATGAGAGACGTTGTTCTGTTAGTTCTCGCTAACAAGCAGGATTTACCCAAAGCCATGGCGGTCCACGAGCTGACAGAGAGACTGGGTTTACACGCACTGAGAGGAAGACAGTGGTTCGTTCAGCCCACATGTGCGGTTCAAGGGTCAGGGTTATATGAAGGACTGGATTGGCTCTCGGATCAACTGTCCAAACGATAAAACACTACAGAAGAAAATACACTAAATCACAACTGAATGTATATATTATGTCTCCAGATTTTTTATTTTTATTATGAGATATTCATGGATTATTATTATTAATCTTTATATGTAATTCACTGTATATTTAATTTACTACTATAAAGACATTTTTTAATTATTTCTGTACATGTCTGCCTACAAAATGTGCCTTTCAAATATCTTCAATAAA

Function

symbol description
arf4b Predicted to enable GTP binding activity. Is expressed in brain; eye; forebrain; and midbrain. Orthologous to human ARF4 (ADP ribosylation factor 4).
arf4 Enables GTP binding activity and epidermal growth factor receptor binding activity. Involved in several processes, including activation of phospholipase D activity; protein ADP-ribosylation; and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Acts upstream of or within dendritic spine development. Located in cytosol; dendritic spine; and ruffle membrane.

NR:

description
ADP-ribosylation factor 4

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_02107105_02108186.mRNA True 834 mRNA 0.39 6 2106894 2108266

Neighbor

gene id symbol gene type direction distance location
CI01000306_02022802_02080261 SLMAP, SLMAPA coding downstream 26633 2022802 ~ 2080261 (-)
CI01000306_01927392_02010649 FLNB coding downstream 96120 1927333 ~ 2010774 (-)
CI01000306_01905901_01906725 NA coding downstream 199874 1905698 ~ 1907020 (-)
CI01000306_01859514_01870761 NA coding downstream 236072 1859005 ~ 1870822 (-)
CI01000306_01826418_01844251 MFN1B coding downstream 262643 1826097 ~ 1844251 (-)
CI01000306_02123270_02125888 PDE12 coding upstream 14450 2122716 ~ 2126015 (-)
CI01000306_02130408_02134817 ATP6AP1L, ATP6AP1LA coding upstream 21543 2129809 ~ 2134817 (-)
CI01000306_02244385_02249335 TRIB3 coding upstream 135122 2243388 ~ 2249335 (-)
CI01000306_02311430_02312497 SOX12 coding upstream 202326 2310592 ~ 2312664 (-)
CI01000306_02393665_02395203 NA coding upstream 285332 2393598 ~ 2395222 (-)
G431949 NA non-coding downstream 1105 2102795 ~ 2105789 (-)
G431937 NA non-coding downstream 134699 1971458 ~ 1972195 (-)
G431777 NA non-coding downstream 182344 1902648 ~ 1924550 (-)
G431935 NA non-coding downstream 185309 1915554 ~ 1921585 (-)
G431954 NA non-coding upstream 4383 2112649 ~ 2113064 (-)
G431710 NA non-coding upstream 33408 2141674 ~ 2142335 (-)
G431957 NA non-coding upstream 35376 2143642 ~ 2143870 (-)
G431968 NA non-coding upstream 75555 2183821 ~ 2220976 (-)
G431719 NA non-coding upstream 126753 2235019 ~ 2287760 (-)
CI01000306_01723684_01726043 MAFGA, MAFGB, MAFG other downstream 357944 1717933 ~ 1726043 (-)
G431814 NA other downstream 794460 1311702 ~ 1312434 (-)
G431706 NA other downstream 943556 1163027 ~ 1163338 (-)
CI01000306_00482506_00494090 PFKLB, PFKL other downstream 1623245 482482 ~ 494090 (-)
G432022 NA other upstream 891970 3000236 ~ 3003891 (-)
CI01000306_04544349_04545034 NA other upstream 2434457 4542723 ~ 4545244 (-)
G433450 NA other upstream 3253377 5361643 ~ 5383763 (-)
G433670 NA other upstream 3932748 6041014 ~ 6041283 (-)
G433985 NA other upstream 4087841 6196107 ~ 6197210 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004358 arf4b coding NC_007122.7 CM002895.2 42466834 ~ 42472941 (-)