XLOC_004359 (pde12)


Basic Information

Item Value
gene id XLOC_004359
gene name pde12
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 42506052 ~ 42525450 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008270
ATAACACAGCCGTTTCTCGATCGCGGAAGCCGCTGGTAGTTTCTCATTCACGAGTTCCTCATGTGGAGTCGGCTGTCATTCTCAACTAGGTCTTTCTTTTTTCGGTTTATTCCTCCGTCTTTAATCCCACCCCGCAGAAATCTGTTCACGGCGGGGTTTAAGATGAGTATGGAGAGATGTGTAGTGCGGTGTGTGGAGTCCGAGTCCAAACTGACCATATCATTCAGTCTGAACGGCAGTAATAAACACATGCTGAGGGACAAAACTGAACCTCTGGGAAAGCTGCTGGACAGAATAGCCAACAACAGCGTCAAGACCACTGCTGGCAAATCCAAAAAACACAAACCAAGCAAAGAAAAACCCGAGAGCCAAGAAGCAGAAAAACCAGAAACCAGTCTAAGTGTGAACGGACAACCAGTTTCACCAGAAACTCTCAATTCGGATGCCTGGGAAGATGGAGCAGTGCTGCAAGTGGGCGACCTAAAGTATAAAGTGGAGAGGAATCCTCCAACATTCACTCAATCCGAGCTGCCGTCTTCACTAATGGCCGGATTTCCTGTGTGTCCGAAAATAGAGATTGAATTTGGAGATCTGAAGGACTGCGAGTTCAGATGGTTTAAAGAAAGTTCAGCTAGTGCATATATTACAGGAGATGCAGAATGCTGGAGAGAAGCTGGATCTGAGCGTGTGTTTACGCCATCGAATTTAGACATTGGGTTAAGGCTGATGTTGAAATGCACGCCGGGGAATGGCTCTAAAATTGGGGAACCCAAAAAACTGGTGTCTTCCAGCGCTGTAGAAGCCGGTCCGGGGATTTGCACATTTGATAACAGGCACATTTACACACAGAAGCTCACTGATGAGGGTTCATTGAGGGTTGTGTCTTATAACATCCTAGCGGACGTTTACGCTCAAACGGATCTTTCTAAAACAGTGTTGTACCCTTATTGTGCGCCCTATGCTCTACAAATGGACTATAGGCAGAATCTGATCAAGAAGGAGCTTTCAGGGTATAACGCTGACATTATTTGCCTTCAGGAGGTGGATAAATGTGTGTTTGTAGACGTTTTATGTCCTGCTTTGGATGCGTTTGGGTTAGATGGTGTTTTTAGGATTAAGGAGAAGCAGCATGAAGGGCTGGCCACATATTTTAGGAGGTCTAAGCTGAAGCTGGTGGAGCAGTATGATGTTATGTTGAGCGAGGCTTTGACCACGGATCCTATACATCGGGAGCTGTGGGAAAAAGTGTCCTGCAGTCCCAGCTTGAAGGAGAAAATTGAAAAGAGGTCGACGACTTTGCAGGTGACCGTCTTACAGTCGTTGTGTGACCCGTCAAGGATATTATGTGTAGGAAACACACACCTGTACTGGCGCCCTGAAGGAGGAAACGTTCGTCTGGTCCAGATAGCAGTGGCTCTGGAACACATGAAGCAGGTGGTGACAGAGAAGCATCCCGGCGCCAGACTCATATTTTCGGGTGATTTTAACAGCACTCCGTCCTCCGGCCTCTTCCAGCTGCTCAGTCAGGGCTGCATCCCGGAGGATCATGAGGACTGGGGCTCCGGGGGTCCAGAAGAGCAGATCCGACTAGGACTGACCAACCCGTTCCAGCTGTCCAGCGCATGTGGAGTCCCGGACTTCACCAACTTCGTAGGAGGATTTCAGGGGTGTCTGGATTATATTTTTGTGGAGCCGCGGACGCTGCAGGTGGAGCAGGTCATTCCTCTGCCCAGTCTGGAGGAGGTGAGCAACTGTGTGGCACTGCCAAGCATCTCGCACCCGTCTGATCACATCGCACTGGTGTGTGACCTCAAGTGGACGACTGACAGCGATTAACCACAAtattaaatcagatttttattcCAGTATTGCATTTGTATGTGTCATATAAATTTATTCTTGCTTGTGTAATGCAATATTATATCACATTAAACAATTTAACAAATGCAACTACTGCACATATTAAAAGCTGCATTTGCCATGCTTAAATTATTAAATTCTTTGCTGAATTTGTAACactttttcttttaacttttcaAATGATATGGTGGTTTGCGTTTGGTCAAAGACaagaatcaaaacaataaaagcataaaaCAGTATTACAGCTTAAA

Function

symbol description
pde12 Predicted to enable 3'-5'-exoribonuclease activity. Predicted to be involved in nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay. Predicted to be active in mitochondrion. Orthologous to human PDE12 (phosphodiesterase 12).

GO:

id name namespace
GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay biological_process
GO:0005739 mitochondrion cellular_component
GO:0000175 3'-5'-exoribonuclease activity molecular_function

KEGG:

id description
ko03019 Messenger RNA biogenesis
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-060519-25 Predicted to enable 3'-5'-exoribonuclease activity. Predicted to be involved in nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay. Predicted to be active in mitochondrion. Orthologous to human PDE12 (phosphodiesterase 12).

Ensembl:

ensembl_id ENSDARG00000030964

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008270 True 2114 mRNA 0.46 4 42506052 42525450

Neighbor

gene id symbol gene type direction distance location
XLOC_004358 arf4b coding downstream 33111 42466834 ~ 42472941 (-)
XLOC_004357 slmapa coding downstream 87678 42304585 ~ 42418374 (-)
XLOC_004355 FLNB coding downstream 275561 42150896 ~ 42230491 (-)
XLOC_004356 NA coding downstream 353479 42151444 ~ 42152573 (-)
XLOC_004354 FP325130.1 coding downstream 371084 42128552 ~ 42134968 (-)
XLOC_004360 atp6ap1la coding upstream 7014 42532464 ~ 42554290 (-)
XLOC_004361 si:ch73-106k19.2 coding upstream 194753 42720203 ~ 42730063 (-)
XLOC_004362 CU459094.2 coding upstream 206440 42731890 ~ 42739148 (-)
XLOC_004363 NA coding upstream 217084 42742534 ~ 42745180 (-)
XLOC_004364 si:ch73-106k19.5 coding upstream 220919 42746369 ~ 42761293 (-)
XLOC_004063 CR854846.1 misc downstream 26378374 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 29814361 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 29884285 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 29914756 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 29992790 12512966 ~ 12513262 (-)
XLOC_004352 NA non-coding downstream 380770 42113072 ~ 42125282 (-)
XLOC_004353 NA non-coding downstream 381781 42121855 ~ 42124271 (-)
XLOC_004349 NA non-coding downstream 461771 42042562 ~ 42044281 (-)
XLOC_004348 NA non-coding downstream 486187 42016754 ~ 42019865 (-)
XLOC_004365 NA non-coding upstream 284064 42809514 ~ 42817704 (-)
XLOC_004368 NA non-coding upstream 536432 43061882 ~ 43062986 (-)
XLOC_004371 NA non-coding upstream 676085 43201535 ~ 43204207 (-)
XLOC_004372 FO834831.1 non-coding upstream 702962 43228412 ~ 43230364 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_02123270_02125888 PDE12 coding CI01000306 null 2122716 ~ 2126015 (-)