RNA id: TCONS_00008494


Basic Information

Item Value
RNA id TCONS_00008494
length 429
lncRNA type intronic
GC content 0.36
exon number 2
gene id XLOC_004356
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 42151444 ~ 42152573 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTACTATGTTAAACAATacaaatctgttaaacatcacttgggaaatattggtaaataaataaaaatatttggaggagggctaataattttatctcaactgtatatattttttcataataaagATACTTTTAACAATGATCTGAttataaacactcaccggccactttattaggtacatctgtccaactgctcgttaacgcaaatttctaatcagccaatcacatggcagcaactcaatgcttttaggtatgtagacaagacgatctgctgcagttcaaattagcatcagaatggggaagaaaggtgatttaagggactttgaacatggcatggttgctggtgctatacgagctggtctgagtgagaatttcagaaacttctgatctactaggattttcacgcacagccatctctagggtttacagaaaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008492 lncRNA downstream 26162 42113072 ~ 42125282 (-) True XLOC_004352
TCONS_00008868 lncRNA downstream 27173 42122748 ~ 42124271 (-) True XLOC_004353
TCONS_00008493 lncRNA downstream 27192 42121855 ~ 42124252 (-) False XLOC_004353
TCONS_00008867 lncRNA downstream 107163 42042562 ~ 42044281 (-) True XLOC_004349
TCONS_00008865 lncRNA downstream 124846 42004163 ~ 42026598 (-) True XLOC_004347
TCONS_00008495 lncRNA upstream 582691 42735264 ~ 42735848 (-) True XLOC_004362
TCONS_00008496 lncRNA upstream 589961 42742534 ~ 42745180 (-) True XLOC_004363
TCONS_00008497 lncRNA upstream 600328 42752901 ~ 42754000 (-) False XLOC_004364
TCONS_00008869 lncRNA upstream 656941 42809514 ~ 42817704 (-) True XLOC_004365
TCONS_00008870 lncRNA upstream 909309 43061882 ~ 43062986 (-) True XLOC_004368
TCONS_00008258 mRNA downstream 16476 42128552 ~ 42134968 (-) True XLOC_004354
TCONS_00008257 mRNA downstream 45134 42101661 ~ 42106310 (-) True XLOC_004351
TCONS_00008256 mRNA downstream 51799 42062067 ~ 42099645 (-) True XLOC_004350
TCONS_00008255 mRNA downstream 154487 41994287 ~ 41996957 (-) True XLOC_004346
TCONS_00008254 mRNA downstream 184590 41966117 ~ 41966854 (-) True XLOC_004344
TCONS_00008260 mRNA upstream 152012 42304585 ~ 42418374 (-) False XLOC_004357
TCONS_00008261 mRNA upstream 154992 42307565 ~ 42315748 (-) False XLOC_004357
TCONS_00008262 mRNA upstream 155204 42307777 ~ 42417194 (-) False XLOC_004357
TCONS_00008265 mRNA upstream 158401 42310974 ~ 42417194 (-) False XLOC_004357
TCONS_00008264 mRNA upstream 158401 42310974 ~ 42417194 (-) False XLOC_004357
TCONS_00008250 other downstream 776318 41375011 ~ 41375126 (-) True XLOC_004339
TCONS_00008244 other downstream 1067081 41078191 ~ 41084363 (-) True XLOC_004334
TCONS_00008236 other downstream 1455308 40678213 ~ 40696136 (-) True XLOC_004327
TCONS_00008222 other downstream 1968648 40182681 ~ 40182796 (-) True XLOC_004319
TCONS_00008210 other downstream 3061453 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008295 other upstream 1970754 44123327 ~ 44123458 (-) True XLOC_004381
TCONS_00008303 other upstream 2184584 44337157 ~ 44339220 (-) True XLOC_004385
TCONS_00008317 other upstream 2454278 44606851 ~ 44613734 (-) False XLOC_004396
TCONS_00008372 other upstream 3278960 45431533 ~ 45435014 (-) False XLOC_004416

Expression Profile

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