RNA id: TCONS_00008865


Basic Information

Item Value
RNA id TCONS_00008865
length 1598
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id XLOC_004347
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 42004163 ~ 42026598 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgtatttgacttttttattgtGTTGTGATGACTTTGCCATCAAGAAATGCAGATAAACAGATGATAACATATCACGACATCCGCATGAAGAGATCTCCAAAACACATGATGTCAACATCAACAGAGTGATTAAACTTTACAAAACATATGATTTAGTACAAATCAGTTTTAACATTCCTCTACATGAGGAGTCGCATTCACAACATCCACAGATGCCACACACTCGATACTGCATTGTAAAACACTCAACCACCTTATATGTGATCAGATAATATACGATAAAAATTCCTATGAGGACAACAGAGTGTTTACCATACTGATCAAATACAACACCTCCCAATATGGGATGTACAGCACTGTGTGTACTTGACATAATTCATCATTAAATCATCATTAAAAAACATCTCCGAAACACATGATGTGCATTAACAAAATGATTAAACTTTACACAACACATGATGTAGTGCACACATTATTAACATTCCTCCACATGAGGAGTCACGTTCACAACATCCACAGACGTCACACACTCAATACTGCATTGAAAAACACTCAGCCACCTTATATGTGATTATAAAATATGATAAGTAGTCCTATGAGGACAACAGAGTGTTTATCATACTGATAAAATACAACACCTCCCAATATGGGACACAGAATTTACTGTACAATctgcagtaacttactgtaaatcagttacaTCAACaatgctgtatttacatttacagcaccatttatcttacTGTATAGGTATTTACAGAATTGTAagtgtatatttactgtaaaatatacagtagttttcacaatgcaactttaaaatacagtaacatactgcatatgTGTTCTACAGTacaatattacagttaaataccgTGTAATTCACACAAACCGTTAAGATGAAAAACATCATTAGCCTTCATTGAAGGTGTTCACACATGTATTTAACAACACATAATAGATTTCCAATGATGGAAACCTGCAAGACTGCATTTATAAAATCAAATGCACTAATATTGTTCATGACATCTATCATAGATGTGTATGATCCAATCAGAGCTGGCTTGCATACATAATGTTTAATATAGACTTTGCTGTCCTCCAGATGGCGCTGCTGGTCCTCTCACATGCATTTCAGCTGTTTGGGGAGAGCTGGGCATCATCTCTGCATCTGTGTCTTCTGCAGTTCCTGGTGAAGATGGTCATTGAGTCTCTTCACAGAAAATCATAATTATTAGAGCAGGTGATTCTCCTGAACTCCTGAAAGTTGTCATCTCCTCATACAGCGAGAGTCTGAGCGTCTGCTGTAGACGTGGAGCTGCTGGAAGCCTCTTCAACTCCAGCTCTTGTTGACTTTGCTGAAGCTCTCGTGCTCAGATGATGAAGTAAGTCTGCAGCTTCTAGTTCAGCTCCAGCAGTCTTCATCTCCGCCTCTTCATCTCCTCTCTGGACAGAAAGAGCTCAATCTCAGCATGTCAAGTGGAGCGTCTCTGCTTTCTTTCTCCAGCTTGGAGGAACTCTGGAGAGCTGATCGTCATCTCtgcatcttcttcttctttctcagCTGCAGATGGAGACAGACGAGCGTCAGGAAAAAGATG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008491 lncRNA downstream 4746 41975577 ~ 41999417 (-) True XLOC_004345
TCONS_00008864 lncRNA downstream 294106 41699575 ~ 41710057 (-) True XLOC_004340
TCONS_00008863 lncRNA downstream 687514 41283291 ~ 41316649 (-) True XLOC_004338
TCONS_00008247 lncRNA downstream 802891 41192329 ~ 41201272 (-) True XLOC_004336
TCONS_00008490 lncRNA downstream 1054345 40948889 ~ 40949818 (-) True XLOC_004333
TCONS_00008867 lncRNA upstream 15964 42042562 ~ 42044281 (-) True XLOC_004349
TCONS_00008492 lncRNA upstream 86474 42113072 ~ 42125282 (-) True XLOC_004352
TCONS_00008493 lncRNA upstream 95257 42121855 ~ 42124252 (-) False XLOC_004353
TCONS_00008868 lncRNA upstream 96150 42122748 ~ 42124271 (-) True XLOC_004353
TCONS_00008494 lncRNA upstream 124846 42151444 ~ 42152573 (-) True XLOC_004356
TCONS_00008255 mRNA downstream 7206 41994287 ~ 41996957 (-) True XLOC_004346
TCONS_00008254 mRNA downstream 37309 41966117 ~ 41966854 (-) True XLOC_004344
TCONS_00008253 mRNA downstream 150289 41846059 ~ 41853874 (-) True XLOC_004343
TCONS_00008252 mRNA downstream 217641 41782683 ~ 41786522 (-) True XLOC_004342
TCONS_00008251 mRNA downstream 224882 41712391 ~ 41779281 (-) True XLOC_004341
TCONS_00008256 mRNA upstream 35469 42062067 ~ 42099645 (-) True XLOC_004350
TCONS_00008257 mRNA upstream 75063 42101661 ~ 42106310 (-) True XLOC_004351
TCONS_00008258 mRNA upstream 101954 42128552 ~ 42134968 (-) True XLOC_004354
TCONS_00008259 mRNA upstream 124298 42150896 ~ 42230491 (-) True XLOC_004355
TCONS_00008260 mRNA upstream 277987 42304585 ~ 42418374 (-) False XLOC_004357
TCONS_00008250 other downstream 629037 41375011 ~ 41375126 (-) True XLOC_004339
TCONS_00008244 other downstream 919800 41078191 ~ 41084363 (-) True XLOC_004334
TCONS_00008236 other downstream 1308027 40678213 ~ 40696136 (-) True XLOC_004327
TCONS_00008222 other downstream 1821367 40182681 ~ 40182796 (-) True XLOC_004319
TCONS_00008210 other downstream 2914172 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008295 other upstream 2096729 44123327 ~ 44123458 (-) True XLOC_004381
TCONS_00008303 other upstream 2310559 44337157 ~ 44339220 (-) True XLOC_004385
TCONS_00008317 other upstream 2580253 44606851 ~ 44613734 (-) False XLOC_004396
TCONS_00008372 other upstream 3404935 45431533 ~ 45435014 (-) False XLOC_004416

Expression Profile

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