CI01000057_00409300_00412579


Basic Information

Item Value
gene id CI01000057_00409300_00412579
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 409168 ~ 412625 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_00409300_00412579.mRNA
ACAACCAACTTGCTCTCCTCAGAGAAACATCTCTCCATCTGAAAGAATGGCTCCAACTTACATGACTGACTACTCCAAACTTTCCAACAAGGAGAAACATAAATTAAGAAAACCTGTGGTGGAAAAGATGCGCAGAGATCGCATCAACAACTGCATCGAGCAGCTCAAATCCATGCTGGAGAAGGAATTCCACCAGCAGGACCCAAACGCCAAGCTGGAGAAAGCCGACATCCTGGAGATGACGGTGGTCTTCCTGAAACAGCAGCTGCAGCCCAAGACTTCAGCTCCACAGAAAGCCCACTTGGATGGCTATTCCCAGTGCTGGAGGGAGACCATGAACTTCCTATCTGTCAACTCCAAGGTGGACGCTGTACGTCAGCATCTGAACCACTGCCAAGAATCCCAGAGATCAGCTAAAGTCCTCACTCACATGTCTCCGGCTTCCCATCAGCCCACGAAGGTCCAAGCTGCTGATGTTATCAAGTGTTACAGACAGCCTTGTGATTGGCTTGTGAGTGTGGGAAAGCGTCAGACGCTTCAGACCCATGCAGACAAAGGATTGTAAATGGAACATGCCTGTGTGTCATCAGTCCGAACTCCAACATAGTGTTGTTTATAGGTGATAAAATCATGTTAGGAGAAAAGAATCCTGTGGTGGCTACCCTAGAATATTTTAACACAAAAATGTTATAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_00409300_00412579.mRNA True 697 mRNA 0.47 3 409168 412625

Neighbor

gene id symbol gene type direction distance location
CI01000057_00400397_00400972 NA coding downstream 8154 400057 ~ 401014 (-)
CI01000057_00381820_00385585 NA coding downstream 23583 381333 ~ 385585 (-)
CI01000057_00339874_00343207 MRTO4 coding downstream 65655 339811 ~ 343695 (-)
CI01000057_00314025_00331813 NA coding downstream 77355 313546 ~ 331813 (-)
CI01000057_00257594_00301277 NA coding downstream 107660 257571 ~ 301508 (-)
CI01000057_00420698_00421063 NA coding upstream 7361 419986 ~ 421063 (-)
CI01000057_00459703_00467870 ABHD6A, ABHD6 coding upstream 46318 458943 ~ 467870 (-)
CI01000057_00475661_00476027 NA coding upstream 62767 475392 ~ 476027 (-)
CI01000057_00534471_00559759 NA coding upstream 120963 533588 ~ 559759 (-)
CI01000057_00561471_00562830 NA coding upstream 148604 561229 ~ 562857 (-)
G244305 NA non-coding downstream 1339 407220 ~ 407829 (-)
G244304 NA non-coding downstream 3195 405583 ~ 405973 (-)
G244264 NA non-coding downstream 100111 308786 ~ 309057 (-)
G244180 NA non-coding downstream 235410 171156 ~ 173758 (-)
G244287 NA non-coding upstream 1287 413912 ~ 415609 (-)
G244338 NA non-coding upstream 67318 479943 ~ 480154 (-)
G244339 NA non-coding upstream 67572 480197 ~ 480417 (-)
G244359 NA non-coding upstream 161911 574536 ~ 574885 (-)
G244358 NA other upstream 157905 570530 ~ 571028 (-)
CI01000057_01801708_01806454 LHFPL5, LHFPL5A other upstream 1388959 1801528 ~ 1806454 (-)
CI01000057_01904867_01921400 NA other upstream 1507431 1904533 ~ 1921905 (-)
CI01000057_03887278_03892054 ABHD8B, ABHD8 other upstream 3479110 3887203 ~ 3892054 (-)
CI01000057_04927533_04931127 CDK4 other upstream 4516119 4927533 ~ 4931420 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00002303 NA coding CM030136.1 CM030136.1 10926868 ~ 10929003 (-)