CI01000057_00257594_00301277


Basic Information

Item Value
gene id CI01000057_00257594_00301277
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 257571 ~ 301508 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_00257594_00301277.mRNA
AGACACGAATACTTGGCCTACGCTTTGCATGTTTGCGAGATTCTGTGTACTTGTACCACAAATCAAATGACACTATCAACTATAGATTCATTTACACAACCACATACATTTATTTAAAAGTCTCAGCGAGCAGCTGCAGATGTTTGAGGATAAACACAAATGATTAGCTGTAAAAGTCTCTGATATAGATTCACAGCAGGACTTGAGTTTTATGTGGTCGAGAGAGCAGAGATGCTCTCGTTTATTCGCTCTCTGCGGTCGGCGCTGGAGGCCGTCTGCCCCGATCTGTTATTAGTTAAAAATGAGATGATTTATAGCCAGAAGCTTCATGCCTTTGTCTTCCCTAATGAGTGTATTTATATGCTGGACGGCTGTATCTTTGTGTTGTTGGTGACCCTGGTGATGCTATCTGGACCAACAGCTGGATCCAACAGCTGTGGCAAGCTACGTGTAAGTTACACAGTGCACCTAATACTTGCCAGACTTCATTATGTGGACATGACCCCTGACCTCACTGACCCTGAACACTGCCGGGGTGTCTCTTTCATGTCCTTGACCAGCAGGTTGGCCTCGGGTCATGAAAGGGGTTATGACCTCTCAGTGAAGGAACGTGATGTGAACGAGTGTGAAGAGACCAATGGAGGGTGTGAAGCTCTGTGCTGTAACACTATTGGCAGTTTCTACTGCAAGTGTCCCGCAGGTCAGGAGCTCAAGGAGGACGGCAAGACCTGCCAGGCAAAAAACAAACATCTTCATGCTTTGCAGGAAGCCTGTGATTATTTTGGCCTCCTGGCGTCCCAGTCAGTAATTAAGATTCCACATATTGACGAATGCCAGGTGCATAACGGCGGCTGCCAGCACAAGTGTGTGAACACCAGGGGTTCGTATCACTGCCAGTGTAACGCTGGATCTCGACTGCATGTGGACGGACGCACCTGCATCGCCGTCCACTCCTGCGGCGTTGGGAACGGAGGCTGCGAGCATTTCTGCGTCCAGAAGACGGTGGGTCATTTCCAGTGCCGCTGTCGACCCGATTACAGACTCGATGCGGACGGGAAACACTGCAAATTGGAGAATCCGTGTGCGGAGCAGAATGGCGGTTGTTCTCAGGAGTGCCGCATGCATGGAGATCAGGCTCGCTGTGAGTGTCGTCCAGGATATCAGCTGGCTGAAGATGCCAAGACCTGTGAAGACATTGACGAGTGCCAGACGGGCCAGGCGGACTGCGCTCACGGCTGCCATAACACTAGAGGATCTTTTATGTGTGTGTGTCCTGCTGCCTATGAGCTGGGTGTTGATGGCAAGCAGTGCTATCGTATCGAGATGGAGATCATAAACAGCTGTGATCATAATAACGGCGGTTGTTCTCATCACTGCGAACATTCAACCAATGGACCCGTGTGCAGCTGTAACCAAGGATACCAGCTGGACGATGACCACAAGACCTGCATCGATATAAACGAGTGTGTCGACGGCAGCTCGTGTTGTGAACATGACTGCACAAACTATCCTGGAGGTTACGAGTGTTACTGTACAGCCGGATATCGTCTGAATGCTGATGGATGCAGTTGTGACGATATAGATGAGTGCTTGGCTGCCAGCGGAGGATGTGATCACACGTGTCAGAACAGCGCCGGCTCCTTCCAGTGTTCCTGTAGACGTGGGTATCGTCTCGATGAAGACAGACACTCCTGTATATTGCTGGAGGAGTCGGTTGAGGCGTTGAGCAGCGGTCAGACGGTGAAGAAACCCCGACCTCAACTCACCATCCTGCAGGACTATGAGCAGATCCTGGAGCGATACGACGACTATGAAGATGACACGGGAGAACTGCGCGCTGAGAACACCTTAACTGAGAAATTCATATGTTTGAATGACTCGTTCGGCTTCGACTGCAGTCTGTCATGTGAGGACTGTGCTAACGGAGGAGTTTGTAACAAACACAGGAACGGCTGTGACTGTCCTGACGGATGGACGGGAATTGTTTGTAATGAAACGTGTCCGGAGGGCTGGTTCGGCGGGAATTGCTCGTTGAGCTGCAAGTGTAAGAACGGCGGTGTGTGTGATCCGGTCACTGGGAGCTGCCGCTGTCCACCAGGGGTCAGTGGAGAGCTGTGTCAGGACGGTCAGTTCACATCATATAACAGACAAAATATATTAATATATATCATTGTCATGATTATAGAGTTTATTGATGCACTCAATTCAGGTTGTCCTAAGGGCCTCTATGGGAAGTTCTGTAATAAGAAGTGTAACTGTGCTAATAATGGACGGTGTCATCGTACTTATGGGGCGTGTTTGTGTGACCCGGGACTGTACGGAAGGTTCTGCCACCTATCGTGTCCTAAGTGGATGTTCGGTCCAGGCTGTTCTGAAGAGTGTCAGTGTGTCCAGCAGAACACTGTAGAGTGTAACCGTCGCCATGGAGCCTGCATCTGCAAGCCCGGTTATCGGGGAGACAGCTGTAAAGACGAGTGTGAATCGGGCTTCTTTGGCTCTGGCTGTGAGAGGAAATGCTCCTGTCCGGATGGAGTGACCTGTGATCATGTGACTGGAGCCTGTCAACCACAATGTCCTGCTGGAAAGAGAGGAGACAAATGTGACCAAGATTGTGTTGGTGGAAGATTTGGGATTGGCTGCTCTCAGTCATGTGACTGTTCAGGGGCACCATGTGACAGGATCACTGGCCAATGCATGTGTCCTGCTGGAACGTTTGGAAAACGTTGTGAAAAAGAGTGTGCGGAGGGTCGCTGGGGTGTTGAATGTCGGGAAACGTGTCCGGCTTGTGAGAACGGAGGCCGATGTGACCGGCGTAATGGCACGTGTGTTTGTGCTCCTGGATTCATCGGCAGATTGTGTCAGAACATGTGTCCCGCGGGCCGTTTTGGTATGGGCTGTCAGCTCAGATGTACGTGTGATAATGGAGGACGCTGTCATCCTGTTACTGGCCGTTGCTCGTGTCCTCCCGGCTGGATGGGCCACAGCTGCAGGAAGGCCTGTAACGCGGGCCGCTGGGGTCTGGACTGTGCGAGTGTGTGTGACTGTGGAAACAGTGACGGAGGGTGTGACGCTCAGACCGGGCGCTGTCAGTGTGAGGCGGGTTTTACTGGACCACGATGTGACCAGAAATGCCCTGCTGGTTCATTTGGACCGGGCTGTAAGCATCGTTGCCAGTGTGAAAACCAGGCATCATGTGACCATGTGGGTGGAGCCTGTACCTCTTGTCCGCAGGGTTTCTATGGTCTGGATTGTCAGCAGAAGTGTGCGTGTATGAACGGGGGTCTCTGTGATCATGTCAGTGGTGAATGCTCCTGTCGGCCTGGCTGGATCGGTCCACACTGTAACCAATCGTGTCCTGCTGGATTGTATGGAGCGAGCTGTTCTCAGACGTGTGTTTGTCACAATAACAGCAGCTGTGATGCTGTAAGCGGTCAGTGCGAGTGCAGCGCAGGGTGGACGGGAGAGTCCTGCTCACAGCGATGTTCTCCAGGTTTCTTCGGGGTGGGCTGTTCTCAGAGCTGTCTGTGTCAGAACGGGGGCTCGTGTGACCCTGTGAGCGGCCGCTGCTTCTGTCCCAGCGGCTGGACGGGATCGGCCTGTCAACTGGAATGCCCAGCGGGTCAGTTCGGGTCAGACTGTCAGGACAGATGTGAGTGTCAGAACAGCGGTCAGTGTGACAGACAGACGGGTCAGTGTGTTTGTCAGCCGGGCTGGACGGGAGAGCGGTGTGAGAATGCGTGTGTATCTGGGCGGTTTGGAGTCGGCTGCGAGGGCCACTGTCAGTGTGACCACAGTGCCCCCTGTCATCATGTGAGCGGACAGTGTTTCTGTCCCGCAGGATGGAGAGGAAGACACTGTGAGAAAGCGTGTCTGCCGGGCTCATATGGTCAGGACTGTCTCCAGCGCTGCTCCTGCCCGCCGGGCACATCATGTCATCACGTCACGGGAGACTGCGGCTGTCCTCCTGGGTACACGGGCAACGGCTGCGAGCACATCTGTCTGTCCGGCACGTTTGGCATCAACTGTAATCAGGTGTGTCAGTGTTCAGAGAGAAACCAGCTGTGCCACCCGGTGTCTGGAGTGTGTTACTGCGCGCCCGGATTCACCGGACCCAAGTGTGAACTGGAGAAAGAAGTGTGTATCTCTCAACAGAAGTTTTCATTTCGAGAATGTGCCGTCTTTAGCATGCAGCTGGATGTTTATAATGTGATGCTGCTGTTGTTTTGTACGTTTTTGCCTCATTCTCGGTGTGTAGCGTGTGCTGATGGATTCTACGGTCCCGACTGTGAGCATCAGTGTCAGTGTTTGAACGCTGGAGTTTGTCTTTCCGTCTCGGGTGCCTGTGAATGTCCGGCCGGATTCATTGGGGCTCGCTGCAATCTCAGTGAGTCACTGCACAGCAAACATACACTTCATCTCATAGACAGCACCCTTTCAGCAGCACAATCCTCTCCTCTTCAGCGTGTCCAGCCGGACGGTACGGGCAGGACTGTTCCCATGTGGCCATCTGTGGAAAGGGGGCGAGAAACGATCCAATCACAGGCAGATGTGTCAGAGATGACCGTGAGCAAGTCTGTCCTCCGGGCTGGTTTGGATCCGGGTGTTCTCAGCGCTGTGACTGCAGTGACAGAGGCATGTGTGACGCCGCCTCTGGAAACTGCTCCTGTGGCCTCGGCTGGACTGGCTCACGCTGTGAGAAAGTGTTTGTGTCTGAACAACAGCACGTGTGACCGAGTAACAGGAACCTGCCAGTGTGAAGCAGGATATTACGGACATCTGTGTGAACATGCGTGTCCTGCCGGTCTGTTTGGGCCTCGCTGTCAGCAGCAGTGTGACTGTATGAACGGGGCGTCCTGCCATCCGAGAACCGGACAGTGTCTCTGTCCCACTGGATTTCATGGCTCTCGTTGTGAGAGAGAATGTGAGCAGGGCACGTTCGGTCTGAACTGCTCTCGGTCATGTGACTGTGCGGATGACACACCATGTGACCCGGTGAGCGGCAGGTGTATCTGCTCCTCAGGAAAGACAGGAGTCAGGTGTGACAGCGACTGCAGTGTGAACCGGTACGGGCCGGACTGTGCTCTCACCTGTGAATGTGAAAACGGAGCTCAGTGCGACAGCAGAAACGGACGCTGCGTGTGTCTAAACGGCTGGATTGGTCTCACGTGTTCAGAACGTGGCCATCCAGAGCTCGACTCCAGAAGTTCAGAAGAGAGTCGGTCATCATAGCACTAACACACACACTCAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_00257594_00301277.mRNA True 5252 mRNA 0.53 37 257571 301508

Neighbor

gene id symbol gene type direction distance location
CI01000057_00249540_00251667 NA coding downstream 5800 248773 ~ 251771 (-)
CI01000057_00208733_00214195 NA coding downstream 43306 208506 ~ 214265 (-)
CI01000057_00009669_00010359 MRPS16 coding downstream 247212 9638 ~ 10359 (-)
CI01000057_00000056_00000860 NA coding downstream 255136 56 ~ 2435 (-)
CI01000057_00314025_00331813 NA coding upstream 12038 313546 ~ 331813 (-)
CI01000057_00339874_00343207 MRTO4 coding upstream 38303 339811 ~ 343695 (-)
CI01000057_00381820_00385585 NA coding upstream 79825 381333 ~ 385585 (-)
CI01000057_00400397_00400972 NA coding upstream 98549 400057 ~ 401014 (-)
CI01000057_00409300_00412579 NA coding upstream 107660 409168 ~ 412625 (-)
G244180 NA non-coding downstream 83813 171156 ~ 173758 (-)
G244178 NA non-coding downstream 90384 165598 ~ 167187 (-)
G244157 NA non-coding downstream 111111 145357 ~ 146460 (-)
G244150 NA non-coding downstream 123936 128492 ~ 133635 (-)
G244264 NA non-coding upstream 7278 308786 ~ 309057 (-)
G244304 NA non-coding upstream 104075 405583 ~ 405973 (-)
G244305 NA non-coding upstream 105712 407220 ~ 407829 (-)
G244287 NA non-coding upstream 112404 413912 ~ 415609 (-)
G244358 NA other upstream 269022 570530 ~ 571028 (-)
CI01000057_01801708_01806454 LHFPL5, LHFPL5A other upstream 1500076 1801528 ~ 1806454 (-)
CI01000057_01904867_01921400 NA other upstream 1618548 1904533 ~ 1921905 (-)
CI01000057_03887278_03892054 ABHD8B, ABHD8 other upstream 3590227 3887203 ~ 3892054 (-)
CI01000057_04927533_04931127 CDK4 other upstream 4627236 4927533 ~ 4931420 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004341 megf6b coding NC_007122.7 CM002895.2 41712391 ~ 41779281 (-)